Showing : watermelon • reset
0
Votes
7
Replies
127
Views
Getting wrong rownames of MSet object when using pfilter from watermelon
wateRmelon Illumina EPIC pfilter
14 months ago anne-kristin.stavrum • 0 • updated 14 months ago lschal • 0
1
Vote
3
Replies
174
Views
Combining pfilter (wateRmelon) and preprocessNoob (minfi)
wateRmelon minfi methylation pfilter preprocessNoob
17 months ago sara.blocquiaux • 0 • updated 17 months ago tgorri • 10
0
Votes
0
Replies
314
Views
Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation ENmix BMIQ wateRmelon
23 months ago moldach • 20
0
Votes
1
Reply
832
Views
MethylSet to MethyLumiSet
minfi methylumi watermelon
4.0 years ago Tom • 10
0
Votes
5
Replies
1.2k
Views
Different errors when attempting to normalize using wateRmelon (v1.1.18)
wateRmelon methylation EPIC normalization
4.0 years ago Wade Davis • 60
0
Votes
2
Replies
560
Views
Error while using BMIQ normalisation on a methylumiSet
limma watermelon methylumi bmiq
4.1 years ago poojitha.stemcell • 0 • updated 4.1 years ago tgorri • 10
1
Vote
2
Replies
1.1k
Views
QC/normalization standards for cancer studies with 450k array data
minfi watermelon cancer 450k normalization
5.5 years ago maden.sean • 10 • updated 5.5 years ago Kasper Daniel Hansen 6.5k
0
Votes
3
Replies
1.2k
Views
minfi getProbeInfo error ( was WateRmelon betaqn error)
watermelon betaqn pfilter getProbeInfo minfi
5.9 years ago gctromp • 10
0
Votes
10
Replies
1.2k
Views
MethyLumiM to MethyLumiSet?
convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon
7.2 years ago Martin Rijlaarsdam • 190 • updated 7.2 years ago Tim Triche ♦ 4.2k
9 results • Page 1 of 1
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Replies
Comment: DESeq2 and shrinkage of log2 fold changes by Michael Love 31k
What do you mean that the set with FDR bound increases? Shrinkage methods in current versions of DESeq2 do not change the FDR (`padj` colum…
Answer: The compare result is different in score and Conc in DiffBind by shangguandong1996 • 20
I know in newer DiffBind version, the default of `score` argument is different, So I post a newer DiffBind version result. ``` library(…
Answer: Conc_1 in differnet dba.report result is slightly different by shangguandong1996 • 20
For a newer DiffBind version ``` library(DiffBind) library(BiocParallel) library(dplyr) tamoxifen <- dba(sampleSheet="tamoxifen.csv") ta…
Comment: Conc_1 in differnet dba.report result is slightly different by shangguandong1996 • 20
Hi, Dr Stark I just find you fixed the link, and I want to use the test data to reproduce my issue ``` library(DiffBind) library(BiocPara…
Comment: DESeq2 and shrinkage of log2 fold changes by Asier • 0
One question related to this. In the case of using the schrinkage (in my dataset of miRNA-seq) the number of SDE miRNAs (FDR) increases wit…
Votes
A: Performing differential gene analysis on RT PCR experimental data
A: Performing differential gene analysis on RT PCR experimental data
Comment: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
Comment: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
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