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0
votes
0
replies
2
views
fgsea usage question - what gene set to use?
fgsea
30 minutes ago
alexandr.gopanenko
• 20
0
votes
0
replies
2
views
Hello how to use ChIPpeakAnno for latest version of ensemble genome aligned data
ChIPpeakAnno
35 minutes ago
Lucky
• 0
0
votes
0
replies
9
views
Error in UseMethod("filter_") for RIPSeeker package
biomaRt
Bioconductor-RIPSeeker
5 hours ago
Yongqing
• 0
0
votes
0
replies
10
views
How to better run DEXSeq with a very large number of samples?
DEXSeq
8 hours ago
Angel
• 0
0
votes
0
replies
10
views
DESeq2 design formula and batch correction
DESeq2
9 hours ago
lransom
• 0
0
votes
0
replies
12
views
stageR error - Some genes have only one transcript; this is incompatible with DTU correction. Remove these transcripts.
stageR
DRIMSeq
19 hours ago
sbcn
• 60
0
votes
0
replies
26
views
metage problem with DESeq
DESeq
metagene2
metagene
2 days ago
GM
• 10
0
votes
0
replies
49
views
VCF File too large for tabix. Best option to make it usable with R?
samtools
tabix
VariantAnnotation
VCFArray
2 days ago
naive
• 0
0
votes
0
replies
27
views
How to get illumina CpG IDs by gene name?
MethylationArrayData
RnBeads
2 days ago
D
• 0
0
votes
1
reply
58
views
ERROR: cannot finish the BAM file. Please check the disk space in the output directory.
Rsubread
4 days ago
Mehrad
• 0
• updated 4 days ago
Yang Liao
• 220
0
votes
2
replies
58
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
7 days ago
tanya
• 0
• updated 6 days ago
Martin Morgan
25k
0
votes
0
replies
36
views
dmrseq on a subset of genomic regions
dmrseq
8 days ago
KIR_F
• 0
0
votes
0
replies
29
views
combineTwoExpressionSet from a4Base is not working properly
a4Base
8 days ago
irene.roman
• 0
0
votes
0
replies
47
views
MEDIPS - export wig with normalized counts
MEDIPS
9 days ago
lshepard
• 40
0
votes
1
reply
58
views
error during installation of 'DEseq2' package
DESeq2
Install
10 days ago
su
• 0
• updated 3 days ago
Hervé Pagès
14k
0
votes
0
replies
53
views
ENmix: how to combine oxBS.MLE with RCP?
ENmix
10 days ago
joannew
• 0
0
votes
0
replies
41
views
WGCNA: Module preservation vs consensus analysis
WGCNA
wgcna
10 days ago
Colari19
• 10
0
votes
0
replies
32
views
mpralm error
mpra
11 days ago
gywang912
• 0
0
votes
0
replies
34
views
enrichPathway error when checking condition lengths used
DOSE
ReactomePA
11 days ago
Lluís Revilla Sancho
• 610
0
votes
0
replies
29
views
Exclude background correction in NADfinder
NADfinder
11 days ago
eva.pinatel
• 10
2
votes
1
reply
41
views
is check=FALSE safe in compact()?
XVector
14 days ago
robmaz77
• 20
• updated 14 days ago
Martin Morgan
25k
0
votes
0
replies
63
views
interaction at any time
edgeR
15 days ago
calvin99
• 0
2
votes
6
replies
114
views
memory leak when subsampling BAM
GenomicFiles
ShortRead
Rsamtools
15 days ago • updated 14 days ago
robmaz77
• 20
0
votes
0
replies
37
views
MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
16 days ago
Helene
• 0
0
votes
1
reply
51
views
Error message
polyester
16 days ago
avaniknejad686
• 0
• updated 15 days ago
shepherl
2.5k
1
vote
0
replies
52
views
Design Matrix for multiple variables in Edge R
designmatrix
DifferentialExpression
edgeR
RNAseq
16 days ago • updated 15 days ago
nageshprabhu.k
• 10
0
votes
0
replies
27
views
R, package: ldblock, function stack1kg error in opening BCFFile
ldblock
16 days ago
ting835698
• 0
0
votes
1
reply
47
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
16 days ago
noeliaruizalonso23
• 0
• updated 13 days ago
Erik Wright
• 150
0
votes
0
replies
43
views
topGO weight01 method: potential bug in the code
topGO
weight01
16 days ago
Vladimir
• 0
0
votes
1
reply
59
views
problem of install packages "org.Hs.eg.db"
org.Hs.eg.db
17 days ago
demomwu
• 0
• updated 16 days ago
Martin Morgan
25k
0
votes
2
replies
61
views
mgcv not updating
mgcv
easyRNASeq
17 days ago
Aliza
• 0
• updated 16 days ago
Martin Morgan
25k
0
votes
0
replies
50
views
How to do pairwise multiple comparisons in MAST
MAST
17 days ago
sysumed3615
• 0
0
votes
0
replies
34
views
Using R to compare whole genome sequences/FASTA files to find percent difference
Genome
GWASdata
18 days ago
Jocelyn
• 0
1
vote
1
reply
79
views
Problem installing DelayedArray
DelayedArray
20 days ago
Dan Tenenbaum
♦ 8.2k
• updated 19 days ago
Hervé Pagès
14k
0
votes
7
replies
211
views
Problem using load_raw() function in crossmeta R package
cross
meta-analysis
crossmeta
20 days ago • updated 11 days ago
michael.s
• 0
0
votes
2
replies
77
views
fastqCleaner adapter_filter() not trimming 5' primer
FastqCleaner
20 days ago • updated 19 days ago
hannalberman
• 0
0
votes
3
replies
76
views
qvalues installation
biocViews
20 days ago • updated 19 days ago
jdorgan
• 0
0
votes
1
reply
54
views
GTF annotation file for featurecount
SeqGate
TarSeqQC
ExperimentHubSoftware
projectR
21 days ago
Ashish
• 0
• updated 21 days ago
ATpoint
• 470
2
votes
2
replies
80
views
Preprocessing Issue
sva
RNASeq
Preprocessing
Normalization
BatchEffect
21 days ago
MOHAMMAD
• 0
• updated 18 days ago
ATpoint
• 470
0
votes
0
replies
37
views
Can subSeq be used for subsampling and determining RNAseq depth without performing Differential Expression?
subSeq
rarefaction
22 days ago
Jirapat
• 0
0
votes
0
replies
27
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
22 days ago
Bogdan
• 610
0
votes
0
replies
39
views
limma on RNASeq time-series with patient and batch as blocking factor
duplicateCorrelation
limma
BatchEffect
22 days ago
Julia
• 0
0
votes
0
replies
48
views
WGCNA - TOM Similarity
WGCNA
24 days ago
Svet
• 0
0
votes
0
replies
32
views
Circular RNA
CircularRNA
RNASeq
RNAseq123
24 days ago
rpokhre2
• 0
0
votes
0
replies
34
views
Problem with creating an MRexperiment with metagenomeseq - invalid class “MRexperiment” object: 1: feature numbers differ between assayData and featu…
MRexperiment
metagenomes
metagenomeSeq
25 days ago
Laura
• 0
1
vote
2
replies
87
views
profileplyr: how to access and replace data from a profileplyr object
profileplyr
25 days ago • updated 24 days ago
alexandre.blais
• 30
0
votes
0
replies
38
views
clustering(): Error in checkForRemoteErrors(val) : 3 nodes produced errors; first error: subscript out of bounds
SingleCellSignalR
26 days ago
pucci
• 0
0
votes
0
replies
40
views
gwascat Liftover Fails Silently
gwascat
4 weeks ago
anailis
• 0
0
votes
1
reply
78
views
DSEQ for DEG in R
microbiomeExplorer
tartare
projectR
4 weeks ago
amoaristotle
• 10
• updated 4 weeks ago
Kevin Blighe
2.5k
0
votes
7
replies
164
views
RUVSeq package for adjusting two variables of interest
RemoveUnwantedVariation
RNA-sequencing
RUVSeq
4 weeks ago
luca.piacentini
• 0
• updated 24 days ago
davide risso
• 870
11,242 results • Page
1 of 225
Recent ...
Replies
Comment: ribosomeProfilingQC - countReads function - is it possible to consider library
by
alexandr.gopanenko
• 20
Hi Jianhong, Thank you very much for your response! I will try it soon! Best regards, Alexandr
Comment: Same methylation probe ID with different locus annotations in Illumina 27k and 4
by
Kevin Blighe
2.5k
I am admittedly not sure, but can only assume that Illumina, through experimentation, concluded that these probes had greater affinity for …
Answer: read nanopore Fastq file
by
James W. MacDonald
56k
You don't say what you want to do once you read it in. But anyway. ``` > library(Biostrings) ## I modified the FASTQ file in the Short…
Comment: Error when launching Shiny app in package sangeranalyseR
by
silonovsa25
• 0
Hi everyone, There are any variants to solve this mistake?
Answer: error when reading fastq file
by
James W. MacDonald
56k
If you have 'U' in your FASTQ files I think that will be a problem. I can barely understand C code, but in `read_solexa_fastq` it says `…
Votes
Answer: read nanopore Fastq file
Answer: error when reading fastq file
Error when launching Shiny app in package sangeranalyseR
Answer: DiffBind analysis for ATAC-Seq error Error processing one or more read files
Answer: DiffBind analysis for ATAC-Seq error Error processing one or more read files
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