alexandr.gopanenko • 20
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Handle: @alexandrgopanenko-11598
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DESeq2 - shrunken LFC calculation
apeglm DESeq2
12 days ago
alexandr.gopanenko • 20 • updated 12 days ago
Michael Love 31k
0
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1
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40
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Subsetting the bamfile by readlength and extracting the information about distribution the SNV across these reads length
Rsamtools
9 months ago
alexandr.gopanenko • 20 • updated 9 months ago
Martin Morgan 25k
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100
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Comment: C: RNA-seq analysis with DESeq2
10 months ago
alexandr.gopanenko • 20
2
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2
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100
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RNA-seq analysis with DESeq2
deseq2
10 months ago
alexandr.gopanenko • 20 • updated 10 months ago
mikhael.manurung • 230
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1
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521
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What tool for reads alignment are prefereble for wavClusteR input bams?
wavcluster
4.1 years ago
alexandr.gopanenko • 20 • updated 4.1 years ago
federico.comoglio • 100
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705
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Comment: C: How to extract only mRNA from TxDb object?
4.2 years ago
alexandr.gopanenko • 20
2
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2
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705
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How to extract only mRNA from TxDb object?
genomicfeatures
4.2 years ago
alexandr.gopanenko • 20 • updated 4.2 years ago
Johannes Rainer ♦ 1.7k
0
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760
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Comment: C: How to combine replicates creating heatmap?
4.2 years ago
alexandr.gopanenko • 20
1
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3
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760
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How to combine replicates creating heatmap?
deseq2 edgeR heatmap.2
4.2 years ago
alexandr.gopanenko • 20 • updated 4.2 years ago
Michael Love 31k
0
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0
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614
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Comment: C: Analysis of Ribo-seq with poly(A) mRNA RNA-seq
4.2 years ago
alexandr.gopanenko • 20
2
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2
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614
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Analysis of Ribo-seq with poly(A) mRNA RNA-seq
deseq2 genomicfeatures genomicalignments
4.2 years ago
alexandr.gopanenko • 20 • updated 4.2 years ago
Michael Love 31k
0
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0
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1.2k
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Comment: C: Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
4.3 years ago
alexandr.gopanenko • 20
1
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2
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1.2k
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Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper run_edgeR
4.3 years ago
alexandr.gopanenko • 20 • updated 4.3 years ago
Thomas Girke ♦ 1.7k
0
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475
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Comment: C: How to extract transcripts from Txdb with length >100
4.3 years ago
alexandr.gopanenko • 20
3
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2
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475
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How to extract transcripts from Txdb with length >100
genomicfeatures rtracklayer
4.3 years ago
alexandr.gopanenko • 20 • updated 4.3 years ago
Martin Morgan 25k
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