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Comment: Comment: add group info within DGE-object before TMM normalization
1 hour ago • updated 32 minutes ago
Gordon Smyth 42k
0
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0
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52
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Comment: Comment: How to calculate coefficient of variation within group?
1 hour ago
Gordon Smyth 42k
0
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1
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55
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Answer: Answer: add group info within DGE-object before TMM normalization
13 hours ago • updated 2 minutes ago
Gordon Smyth 42k
0
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1
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52
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Answer: Answer: How to calculate coefficient of variation within group?
18 hours ago • updated 15 hours ago
Gordon Smyth 42k
1
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1
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168
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Comment: Comment: Using edgeR and a spike-in to calculate absolute abundance
1 day ago
Gordon Smyth 42k
1
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2
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168
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Answer: Answer: Using edgeR and a spike-in to calculate absolute abundance
6 days ago
Gordon Smyth 42k
1
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1
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168
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Comment: Comment: Using edgeR and a spike-in to calculate absolute abundance
7 days ago
Gordon Smyth 42k
0
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1
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238
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Comment: Comment: Dealing with my.contrasts with replicates containing nested samples
11 days ago
Gordon Smyth 42k
3
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1
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97
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Answer: Answer: Why some statistically differently expressed genes are not DEGs?
12 days ago
Gordon Smyth 42k
2
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1
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75
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Answer: Answer: How to download KEGG pathways for list of enriched genes
12 days ago
Gordon Smyth 42k
1
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1
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238
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Comment: Comment: Dealing with my.contrasts with replicates containing nested samples
13 days ago
Gordon Smyth 42k
0
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1
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102
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Answer: Answer: TPM data in limma/voom
14 days ago
Gordon Smyth 42k
1
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1
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238
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Comment: Comment: Dealing with my.contrasts with replicates containing nested samples
14 days ago
Gordon Smyth 42k
0
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1
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238
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Answer: Answer: Dealing with my.contrasts with replicates containing nested samples
15 days ago
Gordon Smyth 42k
0
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0
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165
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Comment: Comment: Getting differentially expressed genes for time points
16 days ago
Gordon Smyth 42k
0
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0
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165
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Comment: Comment: Getting differentially expressed genes for time points
16 days ago
Gordon Smyth 42k
0
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1
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165
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Comment: Comment: Getting differentially expressed genes for time points
16 days ago
Gordon Smyth 42k
3
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1
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165
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Answer: Answer: Getting differentially expressed genes for time points
17 days ago
Gordon Smyth 42k
0
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1
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428
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Comment: Comment: EdgeR: Filtering Counts Causes No Significance.
20 days ago
Gordon Smyth 42k
1
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1
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123
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Answer: Answer: Limma outputs different results for same sample?
23 days ago
Gordon Smyth 42k
0
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1
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157
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Comment: Comment: Can I remove failed samples using DGEList then filterByExpr?
24 days ago
Gordon Smyth 42k
2
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0
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157
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Answer: Answer: Can I remove failed samples using DGEList then filterByExpr?
24 days ago
Gordon Smyth 42k
1
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1
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123
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Comment: Comment: edgeR design matrix for multiple factors
25 days ago
Gordon Smyth 42k
1
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1
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123
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Answer: Answer: edgeR design matrix for multiple factors
25 days ago
Gordon Smyth 42k
1
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1
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169
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Comment: Comment: limma analysis when only Cy5 was used
26 days ago
Gordon Smyth 42k
0
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1
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169
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Comment: Comment: limma analysis when only Cy5 was used
26 days ago
Gordon Smyth 42k
1
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1
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99
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Answer: Answer: How to do limma on 3 factors with multiple levels (e.g 3-way anova) on microarra
29 days ago
Gordon Smyth 42k
0
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0
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656
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Comment: Comment: Unexpected Results from Limma background subtraction & marray normalizatoin
4 weeks ago
Gordon Smyth 42k
1
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1
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169
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Answer: Answer: limma analysis when only Cy5 was used
4 weeks ago • updated 26 days ago
Gordon Smyth 42k
0
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0
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169
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Comment: Comment: limma analysis when only Cy5 was used
4 weeks ago
Gordon Smyth 42k
1
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1
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169
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Comment: Comment: limma analysis when only Cy5 was used
4 weeks ago
Gordon Smyth 42k
3
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1
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202
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Comment: Comment: Limma Paired Analysis - Force intercept to 0
4 weeks ago
Gordon Smyth 42k
1
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1
reply
202
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Comment: Comment: Limma Paired Analysis - Force intercept to 0
4 weeks ago
Gordon Smyth 42k
1
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0
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99
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Answer: Answer: Calculation of logCPM in edgeR
5 weeks ago
Gordon Smyth 42k
0
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0
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484
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Answer: Answer: Creating a model matrix for three age groups using two-colour arrays
5 weeks ago
Gordon Smyth 42k
1
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0
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159
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Comment: Comment: Using limma for the analysis of qPCR data
6 weeks ago • updated 5 weeks ago
Gordon Smyth 42k
0
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0
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674
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Answer: Answer: HTQPCR - create qPCR set from a matrix of CT values
6 weeks ago
Gordon Smyth 42k
2
votes
1
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159
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Answer: Answer: Using limma for the analysis of qPCR data
6 weeks ago
Gordon Smyth 42k
2
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1
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202
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Answer: Answer: Limma Paired Analysis - Force intercept to 0
7 weeks ago
Gordon Smyth 42k
0
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0
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111
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Comment: Comment: Question regarding lib.sizes when using glmQLFit
7 weeks ago
Gordon Smyth 42k
1
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0
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137
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Comment: Comment: Using TMM normalized counts in Deseq2
8 weeks ago
Gordon Smyth 42k
0
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0
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183
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Comment: Comment: Duplicated ENTREZID gene annotations org.Hs.eg.db
8 weeks ago
Gordon Smyth 42k
2
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1
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183
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Answer: Answer: Duplicated ENTREZID gene annotations org.Hs.eg.db
8 weeks ago
Gordon Smyth 42k
0
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0
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316
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Comment: Comment: Duplicate correlation with limma in before-after exposure experiment
9 weeks ago
Gordon Smyth 42k
0
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0
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114
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Answer: Answer: Limma-Voom - Time series experiment with one group (duplicateCorrelation() funct
10 weeks ago
Gordon Smyth 42k
0
votes
1
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316
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Comment: Comment: Duplicate correlation with limma in before-after exposure experiment
11 weeks ago • updated 10 weeks ago
Gordon Smyth 42k
2
votes
0
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182
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Answer: Answer: read.idat function misleading error when reading compressed files
11 weeks ago • updated 10 weeks ago
Gordon Smyth 42k
3
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1
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144
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Answer: Answer: Self-contained gene set testing with DESeq2 results
11 weeks ago
Gordon Smyth 42k
0
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1
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316
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Comment: Comment: Duplicate correlation with limma in before-after exposure experiment
12 weeks ago
Gordon Smyth 42k
3
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0
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101
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Answer: Answer: Limma: extend reading raw Illumina files, with Gene Omnbus Expression formats
12 weeks ago
Gordon Smyth 42k
4,097 results • Page 1 of 82
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