Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
0
replies
79
views
Answer:
Answer: Doing comparison of RNA-seq data using EdgeR
3 hours ago
Gordon Smyth
50k
0
votes
0
replies
58
views
Answer:
Answer: Differing results from plotMDS and PCAtools
3 hours ago
Gordon Smyth
50k
1
vote
0
replies
517
views
Comment:
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
1 day ago
Gordon Smyth
50k
0
votes
0
replies
286
views
Answer:
Answer: Microarray Limma Model fitting and DEG
1 day ago
Gordon Smyth
50k
0
votes
0
replies
331
views
Comment:
Comment: DEG Filtering
1 day ago
Gordon Smyth
50k
0
votes
1
reply
286
views
Answer:
Answer: Microarray Limma Model fitting and DEG
2 days ago
Gordon Smyth
50k
0
votes
1
reply
146
views
Comment:
Comment: limma models out of memory issue on Slurm HPC
3 days ago
Gordon Smyth
50k
0
votes
1
reply
146
views
Answer:
Answer: limma models out of memory issue on Slurm HPC
3 days ago
Gordon Smyth
50k
2
votes
1
reply
335
views
Comment:
Comment: Batch Effect Correction, Gene Filtering
6 days ago
Gordon Smyth
50k
1
vote
0
replies
335
views
Comment:
Comment: Batch Effect Correction, Gene Filtering
6 days ago
Gordon Smyth
50k
0
votes
0
replies
152
views
Answer:
Answer: Using splicing junction counts with edgeR/limma-voom
7 days ago
Gordon Smyth
50k
2
votes
1
reply
517
views
Answer:
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
8 days ago
Gordon Smyth
50k
1
vote
1
reply
331
views
Comment:
Comment: DEG Filtering
9 days ago • updated 6 days ago
Gordon Smyth
50k
1
vote
1
reply
331
views
Comment:
Comment: DEG Filtering
10 days ago
Gordon Smyth
50k
1
vote
0
replies
224
views
Comment:
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
10 days ago
Gordon Smyth
50k
1
vote
1
reply
224
views
Answer:
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
10 days ago
Gordon Smyth
50k
0
votes
1
reply
328
views
Comment:
Comment: limma: vooma mean-variance trend and data filtration
11 days ago
Gordon Smyth
50k
0
votes
0
replies
129
views
Comment:
Comment: Rsubread: buildindex() should support multiple reference files
12 days ago
Gordon Smyth
50k
2
votes
1
reply
331
views
Answer:
Answer: DEG Filtering
12 days ago • updated 11 days ago
Gordon Smyth
50k
0
votes
0
replies
214
views
Answer:
Answer: RNAseq analysis
13 days ago
Gordon Smyth
50k
1
vote
1
reply
200
views
Answer:
Answer: between lane normalization upper quantile
14 days ago
Gordon Smyth
50k
2
votes
1
reply
192
views
Answer:
Answer: Question about extracting co-efficients for pairwise comparisons in edgeR
15 days ago
Gordon Smyth
50k
0
votes
1
reply
343
views
Answer:
Answer: DESeq2 filtering vs edgeR filtering
15 days ago
Gordon Smyth
50k
0
votes
1
reply
328
views
Comment:
Comment: limma: vooma mean-variance trend and data filtration
17 days ago
Gordon Smyth
50k
0
votes
0
replies
307
views
Answer:
Answer: Cross-species analysis - how to compute the mid parent value?
20 days ago
Gordon Smyth
50k
0
votes
1
reply
328
views
Answer:
Answer: limma: vooma mean-variance trend and data filtration
22 days ago • updated 21 days ago
Gordon Smyth
50k
0
votes
1
reply
425
views
Comment:
Comment: Constrast for Time Course Experiments using Limma
22 days ago
Gordon Smyth
50k
2
votes
1
reply
425
views
Answer:
Answer: Constrast for Time Course Experiments using Limma
22 days ago
Gordon Smyth
50k
0
votes
0
replies
218
views
Comment:
Comment: Differential enrichment analysis
23 days ago
Gordon Smyth
50k
1
vote
0
replies
290
views
Answer:
Answer: Right way to pseudobulk donors across replicates in edgeR
23 days ago
Gordon Smyth
50k
1
vote
1
reply
425
views
Comment:
Comment: Constrast for Time Course Experiments using Limma
23 days ago
Gordon Smyth
50k
0
votes
0
replies
587
views
Comment:
Comment: Strange logFC values in differential methylation site anslysis
24 days ago
Gordon Smyth
50k
0
votes
1
reply
290
views
Comment:
Comment: Right way to pseudobulk donors across replicates in edgeR
24 days ago
Gordon Smyth
50k
0
votes
1
reply
587
views
Comment:
Comment: Strange logFC values in differential methylation site anslysis
25 days ago
Gordon Smyth
50k
0
votes
1
reply
587
views
Comment:
Comment: Strange logFC values in differential methylation site anslysis
25 days ago
Gordon Smyth
50k
0
votes
0
replies
174
views
Answer:
Answer: Different results from DGE using different subgroups in model.matrix
25 days ago
Gordon Smyth
50k
0
votes
0
replies
587
views
Comment:
Comment: Strange logFC values in differential methylation site anslysis
26 days ago • updated 25 days ago
Gordon Smyth
50k
0
votes
1
reply
587
views
Answer:
Answer: Strange logFC values in differential methylation site anslysis
26 days ago
Gordon Smyth
50k
2
votes
0
replies
341
views
Answer:
Answer: DGE analysis with LIMMA
27 days ago
Gordon Smyth
50k
0
votes
0
replies
186
views
Answer:
Answer: ExactTest vs QLFTest
29 days ago • updated 27 days ago
Gordon Smyth
50k
0
votes
1
reply
219
views
Comment:
Comment: Interactions in batches of varying size with different number of replicates usin
4 weeks ago
Gordon Smyth
50k
0
votes
1
reply
219
views
Comment:
Comment: Interactions in batches of varying size with different levels of replicates usin
4 weeks ago
Gordon Smyth
50k
0
votes
1
reply
218
views
Answer:
Answer: Differential enrichment analysis
4 weeks ago
Gordon Smyth
50k
0
votes
2
replies
587
views
Comment:
Comment: Strange logFC values in differential methylation site anslysis
4 weeks ago
Gordon Smyth
50k
0
votes
0
replies
209
views
Answer:
Answer: Error in featureCounts matrix
4 weeks ago
Gordon Smyth
50k
1
vote
1
reply
382
views
Comment:
Comment: Library size normalization in methylation count analysis
4 weeks ago
Gordon Smyth
50k
0
votes
1
reply
382
views
Comment:
Comment: Library size normalization in methylation count analysis
4 weeks ago
Gordon Smyth
50k
0
votes
1
reply
382
views
Answer:
Answer: Library size normalization in methylation count analysis
4 weeks ago
Gordon Smyth
50k
0
votes
2
replies
421
views
Comment:
Comment: limma fo continous variables
5 weeks ago
Gordon Smyth
50k
0
votes
1
reply
421
views
Comment:
Comment: limma fo continous variables
5 weeks ago
Gordon Smyth
50k
5,028 results • Page
1 of 101
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6