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Comment: Comment: limma models out of memory issue on Slurm HPC
24 days ago Gordon Smyth 50k
2
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784
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Answer: Answer: limma models out of memory issue on Slurm HPC
24 days ago • updated 15 days ago Gordon Smyth 50k
2
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1
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410
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Comment: Comment: Batch Effect Correction, Gene Filtering
27 days ago Gordon Smyth 50k
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0
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410
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Comment: Comment: Batch Effect Correction, Gene Filtering
27 days ago Gordon Smyth 50k
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205
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Answer: Answer: Using splicing junction counts with edgeR/limma-voom
28 days ago Gordon Smyth 50k
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665
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Answer: Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
29 days ago Gordon Smyth 50k
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415
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Comment: Comment: DEG Filtering
4 weeks ago • updated 27 days ago Gordon Smyth 50k
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415
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Comment: Comment: DEG Filtering
4 weeks ago Gordon Smyth 50k
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0
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271
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Comment: Comment: edgeR, 3 x 2 design with a batch effect and contrasts
4 weeks ago Gordon Smyth 50k
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271
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Answer: Answer: edgeR, 3 x 2 design with a batch effect and contrasts
4 weeks ago Gordon Smyth 50k
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436
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Comment: Comment: limma: vooma mean-variance trend and data filtration
4 weeks ago Gordon Smyth 50k
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162
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Comment: Comment: Rsubread: buildindex() should support multiple reference files
4 weeks ago Gordon Smyth 50k
2
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1
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415
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Answer: Answer: DEG Filtering
4 weeks ago Gordon Smyth 50k
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248
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Answer: Answer: RNAseq analysis
4 weeks ago Gordon Smyth 50k
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1
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236
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Answer: Answer: between lane normalization upper quantile
5 weeks ago Gordon Smyth 50k
2
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1
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239
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Answer: Answer: Question about extracting co-efficients for pairwise comparisons in edgeR
5 weeks ago Gordon Smyth 50k
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397
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Answer: Answer: DESeq2 filtering vs edgeR filtering
5 weeks ago Gordon Smyth 50k
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436
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Comment: Comment: limma: vooma mean-variance trend and data filtration
5 weeks ago Gordon Smyth 50k
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0
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353
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Answer: Answer: Cross-species analysis - how to compute the mid parent value?
5 weeks ago Gordon Smyth 50k
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436
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Answer: Answer: limma: vooma mean-variance trend and data filtration
6 weeks ago Gordon Smyth 50k
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476
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Comment: Comment: Constrast for Time Course Experiments using Limma
6 weeks ago Gordon Smyth 50k
2
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1
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476
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Answer: Answer: Constrast for Time Course Experiments using Limma
6 weeks ago Gordon Smyth 50k
0
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0
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264
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Comment: Comment: Differential enrichment analysis
6 weeks ago Gordon Smyth 50k
1
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0
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376
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Answer: Answer: Right way to pseudobulk donors across replicates in edgeR
6 weeks ago Gordon Smyth 50k
1
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1
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476
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Comment: Comment: Constrast for Time Course Experiments using Limma
6 weeks ago Gordon Smyth 50k
0
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0
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673
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Comment: Comment: Strange logFC values in differential methylation site anslysis
6 weeks ago Gordon Smyth 50k
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1
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376
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Comment: Comment: Right way to pseudobulk donors across replicates in edgeR
6 weeks ago Gordon Smyth 50k
0
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1
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673
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Comment: Comment: Strange logFC values in differential methylation site anslysis
6 weeks ago Gordon Smyth 50k
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1
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673
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Comment: Comment: Strange logFC values in differential methylation site anslysis
6 weeks ago Gordon Smyth 50k
0
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0
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206
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Answer: Answer: Different results from DGE using different subgroups in model.matrix
6 weeks ago Gordon Smyth 50k
0
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0
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673
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Comment: Comment: Strange logFC values in differential methylation site anslysis
6 weeks ago Gordon Smyth 50k
0
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1
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673
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Answer: Answer: Strange logFC values in differential methylation site anslysis
6 weeks ago Gordon Smyth 50k
2
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0
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418
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Answer: Answer: DGE analysis with LIMMA
6 weeks ago Gordon Smyth 50k
0
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0
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229
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Answer: Answer: ExactTest vs QLFTest
7 weeks ago • updated 6 weeks ago Gordon Smyth 50k
0
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1
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262
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Comment: Comment: Interactions in batches of varying size with different number of replicates usin
7 weeks ago Gordon Smyth 50k
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1
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262
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Comment: Comment: Interactions in batches of varying size with different levels of replicates usin
7 weeks ago Gordon Smyth 50k
0
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1
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264
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Answer: Answer: Differential enrichment analysis
7 weeks ago Gordon Smyth 50k
0
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2
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673
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Comment: Comment: Strange logFC values in differential methylation site anslysis
7 weeks ago Gordon Smyth 50k
0
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0
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249
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Answer: Answer: Error in featureCounts matrix
7 weeks ago Gordon Smyth 50k
1
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1
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436
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Comment: Comment: Library size normalization in methylation count analysis
7 weeks ago Gordon Smyth 50k
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436
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Comment: Comment: Library size normalization in methylation count analysis
7 weeks ago Gordon Smyth 50k
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436
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Answer: Answer: Library size normalization in methylation count analysis
7 weeks ago Gordon Smyth 50k
0
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2
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508
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Comment: Comment: limma fo continous variables
8 weeks ago Gordon Smyth 50k
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1
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508
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Comment: Comment: limma fo continous variables
8 weeks ago Gordon Smyth 50k
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1
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508
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Answer: Answer: limma fo continous variables
8 weeks ago Gordon Smyth 50k
0
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264
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Answer: Answer: limma model matrix questions
8 weeks ago Gordon Smyth 50k
0
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1
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381
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
8 weeks ago Gordon Smyth 50k
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1
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292
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Answer: Answer: Limma with replicates at different time points
8 weeks ago Gordon Smyth 50k
0
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0
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202
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Answer: Answer: Main effect on multiple comparisons in limma
8 weeks ago Gordon Smyth 50k
3
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364
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Comment: Comment: Confusion about LFC using contrasts weights in EdgeR
8 weeks ago Gordon Smyth 50k
5,072 results • Page 2 of 102
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