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Comment:
Comment: JoinLayers function for Seurat Object for annotation with SingleR
3 months ago
Bine
▴ 40
1
vote
4
replies
1.4k
views
JoinLayers function for Seurat Object for annotation with SingleR
SingleR
SeuratscRNA
written 3 months ago by
Bine
▴ 40
0
votes
1
reply
1.1k
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Comment:
Comment: SingleR annotation of several slots/patients
3 months ago
Bine
▴ 40
0
votes
1
reply
1.1k
views
Comment:
Comment: SingleR annotation of several slots/patients
3 months ago
Bine
▴ 40
2
votes
4
replies
1.1k
views
SingleR annotation of several slots/patients
SingleR
written 3 months ago by
Bine
▴ 40
1
vote
1
reply
316
views
DESeqResults object -> extract statistics results with rownames (gene)
DESeq2
updated 4 months ago by
ATpoint
★ 4.0k • written 4 months ago by
Bine
▴ 40
0
votes
0
replies
676
views
Comment:
Comment: Subsetting Range Summarized Experiment
5 months ago
Bine
▴ 40
0
votes
1
reply
676
views
Comment:
Comment: Subsetting Range Summarized Experiment
5 months ago
Bine
▴ 40
0
votes
1
reply
676
views
Comment:
Comment: Subsetting Range Summarized Experiment
5 months ago
Bine
▴ 40
3
votes
6
replies
676
views
Subsetting Range Summarized Experiment
SummarizedExperiment
5 months ago
Bine
▴ 40
0
votes
1
reply
1.6k
views
Comment:
Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
18 months ago
Bine
▴ 40
0
votes
1
reply
1.6k
views
Comment:
Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
18 months ago
Bine
▴ 40
0
votes
1
reply
1.6k
views
Comment:
Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
18 months ago
Bine
▴ 40
3
votes
7
replies
1.6k
views
Different results between Limma and DESEQ2 for Differential Expression Analysis
DESeq2
limma
updated 18 months ago by
swbarnes2
★ 1.3k • written 18 months ago by
Bine
▴ 40
0
votes
1
reply
929
views
Comment:
Comment: DESEQ2 several samples per individual
18 months ago
Bine
▴ 40
0
votes
1
reply
929
views
Comment:
Comment: DESEQ2 several samples per individual
18 months ago
Bine
▴ 40
3
votes
5
replies
929
views
DESEQ2 several samples per individual
DESeq2
updated 18 months ago by
Michael Love
41k • written 18 months ago by
Bine
▴ 40
0
votes
1
reply
2.3k
views
Comment:
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
22 months ago
Bine
▴ 40
0
votes
1
reply
2.3k
views
Comment:
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
22 months ago
Bine
▴ 40
3
votes
5
replies
2.3k
views
Print EnhancedVolcano Plot as jpeg or similar in R Notebook
EnhancedVolcano
updated 22 months ago by
Kevin Blighe
★ 3.9k • written 22 months ago by
Bine
▴ 40
1
vote
1
reply
486
views
Result table pvalue and adjusted p value
DESeq2
updated 2.1 years ago by
Michael Love
41k • written 2.1 years ago by
Bine
▴ 40
0
votes
0
replies
864
views
Comment:
Comment: DESEQ2 Results log2fold and pvalue changes after removing genes
2.3 years ago
Bine
▴ 40
0
votes
0
replies
864
views
Comment:
Comment: DESEQ2 Results log2fold and pvalue changes after removing genes
2.3 years ago
Bine
▴ 40
3
votes
4
replies
864
views
DESEQ2 Results log2fold and pvalue changes after removing genes
DESeq2
2.3 years ago
Bine
▴ 40
0
votes
0
replies
740
views
Comment:
Comment: padjust after running DESEQ2
2.3 years ago
Bine
▴ 40
2
votes
2
replies
740
views
padjust after running DESEQ2
DESeq2
2.3 years ago
Bine
▴ 40
1
vote
1
reply
459
views
Multiple samples per individual
DESeq2
updated 2.5 years ago by
Michael Love
41k • written 2.5 years ago by
Bine
▴ 40
0
votes
1
reply
1.0k
views
Comment:
Comment: Remove genes in a list from cts
2.5 years ago
Bine
▴ 40
2
votes
4
replies
1.0k
views
Remove genes in a list from cts
DESeq2
updated 2.5 years ago by
swbarnes2
★ 1.3k • written 2.5 years ago by
Bine
▴ 40
0
votes
1
reply
1.3k
views
Comment:
Comment: Combining two groups in contrast deseq2
2.5 years ago
Bine
▴ 40
0
votes
1
reply
1.3k
views
Comment:
Comment: Combining two groups in contrast deseq2
2.5 years ago
Bine
▴ 40
1
vote
5
replies
1.3k
views
Combining two groups in contrast deseq2
DESeq2
updated 2.5 years ago by
Michael Love
41k • written 2.5 years ago by
Bine
▴ 40
0
votes
2
replies
2.3k
views
Comment:
Comment: Combat and dds Object
2.7 years ago
Bine
▴ 40
5
votes
8
replies
2.3k
views
Combat and dds Object
DESeq2
combat
updated 13 months ago by
ATpoint
★ 4.0k • written 2.7 years ago by
Bine
▴ 40
0
votes
0
replies
753
views
Comment:
Comment: Problems with pulling specific variables
2.7 years ago
Bine
▴ 40
0
votes
1
reply
753
views
Comment:
Comment: Problems with pulling specific variables
2.7 years ago
Bine
▴ 40
0
votes
4
replies
753
views
Problems with pulling specific variables
DESeq2
2.7 years ago
Bine
▴ 40
0
votes
0
replies
1.7k
views
Comment:
Comment: ColData use only certain variable within
2.8 years ago
Bine
▴ 40
0
votes
1
reply
1.7k
views
Comment:
Comment: ColData use only certain variable within
2.8 years ago
Bine
▴ 40
0
votes
0
replies
1.7k
views
Comment:
Comment: ColData use only certain variable within
2.8 years ago
Bine
▴ 40
0
votes
1
reply
1.7k
views
Comment:
Comment: ColData use only certain variable within
2.8 years ago
Bine
▴ 40
0
votes
1
reply
1.7k
views
Comment:
Comment: ColData use only certain variable within
2.8 years ago
Bine
▴ 40
6
votes
12
replies
1.7k
views
ColData use only certain variable within
DESeq2
2.8 years ago
Bine
▴ 40
0
votes
1
reply
1.6k
views
Comment:
Comment: Controlling for Batch Effect and Grouping in DESEQ2
2.9 years ago
Bine
▴ 40
0
votes
1
reply
1.6k
views
Comment:
Comment: Controlling for Batch Effect and Grouping in DESEQ2
2.9 years ago
Bine
▴ 40
0
votes
1
reply
1.6k
views
Comment:
Comment: Controlling for Batch Effect and Grouping in DESEQ2
2.9 years ago
Bine
▴ 40
4
votes
7
replies
1.6k
views
Controlling for Batch Effect and Grouping in DESEQ2
DESeq2
updated 2.9 years ago by
Michael Love
41k • written 2.9 years ago by
Bine
▴ 40
0
votes
0
replies
1.1k
views
Comment:
Comment: Grouping DESEQ2 with additional variable
2.9 years ago
Bine
▴ 40
1
vote
2
replies
1.1k
views
Grouping DESEQ2 with additional variable
DESeq2
2.9 years ago
Bine
▴ 40
0
votes
0
replies
2.7k
views
Comment:
Comment: DESeq2 comparison two cell types and two genotypes
2.9 years ago
Bine
▴ 40
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