Badge: Popular Question

Badge: Popular Question • All »

Awarded 4574 times for: created a question with more than 1,000 views

Recently awarded to

4 months ago to

Martin Morgan ♦♦ 24k

United States

For: Error in getClass(Class, where = topenv(parent.frame())) : "AnnotatedDataFrame" is not a defined class

4 months ago to

Wei Shi • 3.2k

Australia

For: normalization of illumina bead array data

4 months ago to

Hervé Pagès ♦♦ 14k

United States

For: how to obtain base counts from BAM file at specific genomic coordinates

4 months ago to

Michael Love ♦ 26k

United States

For: Updated DESeq2 performance on highly replicated yeast RNA-seq data

4 months ago to

Bogdan • 580

Palo Alto, CA, USA

For: Error in GenomeInfoDb:::getDanglingSeqlevels

4 months ago to

António Miguel de Jesus Domingues • 470

Germany

For: ChIPseeker: Error in annotatePeak

4 months ago to

Stephanie M. Gogarten • 740

University of Washington

For: Error in biocLite("BiocUpgrade") when trying to update to latest release

4 months ago to

Stephanie M. Gogarten • 740

University of Washington

For: Affymetrix CEL files

4 months ago to

Janet Young • 740

Fred Hutchinson Cancer Research Center, Seattle, WA, USA

For: rtracklayer export: enable trackline for GRanges and RleLists, etc?

5 months ago to

Didi • 10

For: VariantAnnotation: Error with ScanVcfParam

5 months ago to

Nik Tuzov • 70

United States

For: Limma-voom vs limma-trend

5 months ago to

jaro.slamecka • 130

Mitchell Cancer Institute, Mobile AL, USA

For: Problem with reading raw Illumina Human HT-12 v4 data using beadarray

5 months ago to

Leonardo Collado Torres • 710

United States

For: Trying to use the liftOver function from the rtracklayer package in R 2.14.0

6 months ago to

pbachali • 20

For: How to perform ANOVA to calculate differential gene expression with three categories

6 months ago to

pbachali • 20

For: Filtering low intensity probes in microarray data

7 months ago to

romanowska.j • 10

For: Error: Bioconductor version '3.8' requires R version '3.5'

8 months ago to

gil.hornung • 0

For: "Over-correction" in the size-factors of the DESeq2 package

8 months ago to

Thomas Girke • 1.7k

United States

For: GOstats install error under Linux Debian

8 months ago to

Sara • 0

For: edgeR normalization method

8 months ago to

rahel14350 • 10

United States

For: DEXSeq Error in lf[[1]] : subscript out of bounds

9 months ago to

csijst • 0

Singapore/National University of Singapore

For: DESeq2 - DESeqDatasetFromMatrix

9 months ago to

Kasper Daniel Hansen ♦ 6.4k

United States

For: smoothing function in bumphunter in minfi

10 months ago to

mjrarcher • 0

For: What is colData? How do I make one?

11 months ago to

Bogdan • 580

Palo Alto, CA, USA

For: about VCF and BAM files

11 months ago to

Bogdan • 580

Palo Alto, CA, USA

For: (batch) corrections of RNA-seq data: integrating LIMMA and SVA

11 months ago to

Bogdan • 580

Palo Alto, CA, USA

For: heatmap of genes based on enriched GO categories

11 months ago to

Bogdan • 580

Palo Alto, CA, USA

For: edgeR and removeBatchEffect()

11 months ago to

Bogdan • 580

Palo Alto, CA, USA

For: extracting the genes associated with the clusters

11 months ago to

James W. MacDonald ♦ 52k

United States

For: Saving/loading TxDb objects

11 months ago to

Vinicius Henrique da Silva • 40

Brazil

For: Error: package ‘snpMatrix’ is not available (for R version 3.2.2)

11 months ago to

Michael Love ♦ 26k

United States

For: DESeq2 coefficient of variation

11 months ago to

SamGG • 190

France

For: How to carry out a gene set analysis using custom gene sets?

11 months ago to

Hervé Pagès ♦♦ 14k

United States

For: how to obtain base counts from BAM file at specific genomic coordinates

11 months ago to

Lluís Revilla Sancho • 530

European Union

For: Installing arrayQualityMetrics: ERROR: lazy loading failed

11 months ago to

Julie Zhu • 4.1k

United States

For: GEOquery

11 months ago to

Julie Zhu • 4.1k

United States

For: CRISPRseek question on scoring

11 months ago to

Martin Morgan ♦♦ 24k

United States

For: Bioconductor Senior Programmer / Analyst

11 months ago to

Martin Morgan ♦♦ 24k

United States

For: BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA

11 months ago to

Martin Morgan ♦♦ 24k

United States

For: Error in getClass(Class, where = topenv(parent.frame())) : "AnnotatedDataFrame" is not a defined class

11 months ago to

shepherl ♦♦ 1.7k

United States

For: BoF Bioc2017: Analyzing publicly available cancer genomics data from GTEx and TCGA with Bioconductor

11 months ago to

Michael Love ♦ 26k

United States

For: DESeq2: Error from the generic function 'plotMA' defined in package 'BiocGenerics'