Badge: Popular Question

Badge: Popular Question • All »

Awarded 1095 times for: created a question with more than 1,000 views

Recently awarded to

10 months ago to

Dario Strbenac • 1.4k

Australia

For: GRanges Constructor With seqlengths

10 months ago to

Dario Strbenac • 1.4k

Australia

For: GRanges Constructor With seqlengths

10 months ago to

Guido Hooiveld • 2.2k

Wageningen University, Wageningen, the Netherlands

For: import DOT (GraphViz) into Cytoscape

10 months ago to

igor • 20

United States

For: DiffBind differential binding normalization with different levels of binding

10 months ago to

Jurat Shahidin • 60

Italy

For: Find overlap for more than 2 GRanges object simultaneously (reproducible example is updated) ?

10 months ago to

Deepak Tanwar • 10

McGill University, Canada

For: Upper triangular matrix heatmap using pheatmap package

10 months ago to

Guido Hooiveld • 2.2k

Wageningen University, Wageningen, the Netherlands

For: import DOT (GraphViz) into Cytoscape

10 months ago to

chris86 • 380

UCL, United Kingdom

For: Limma camera function never gives any differentially expressed gene sets

10 months ago to

Gordon Smyth ♦ 33k

Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia

For: Limma - RNA-Seq DE genes - Quantile normalized log transformed RPKM data

10 months ago to

Luo Weijun • 1.4k

United States

For: GAGE/Pathview RNA-Seq Data Pathway and Gene-set Analysis Workflows

10 months ago to

maltethodberg • 50

UCPH

For: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.

10 months ago to

Bogdan • 480

Palo Alto, CA, USA

For: question about Gviz

11 months ago to

Laurent Gatto ♦ 920

United Kingdom

For: Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.

11 months ago to

Gordon Smyth ♦ 33k

Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia

For: limma: paired + multiple comparisons + technical replication?

11 months ago to

Ryan C. Thompson ♦ 6.5k

The Scripps Research Institute, La Jolla, CA

For: Rsubread : featureCounts PEReadsReordering=TRUE deletes unpaired reads?

11 months ago to

Janet Young • 730

Fred Hutchinson Cancer Research Center, Seattle, WA, USA

For: subset a RleList using GRanges object?

11 months ago to

Janet Young • 730

Fred Hutchinson Cancer Research Center, Seattle, WA, USA

For: subset a RleList using GRanges object?

11 months ago to

Michael Love ♦ 17k

United States

For: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

11 months ago to

Rory Stark • 2.4k

CRUK, Cambridge, UK

For: a diffBind problem

11 months ago to

Michael Love ♦ 17k

United States

For: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

11 months ago to

Gordon Smyth ♦ 33k

Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia

For: total count filter cutoff (edgeR)

11 months ago to

svlachavas • 570

Greece/Athens/National Hellenic Research Foundation

For: GeneChip Human Transcriptome Array 2.0 analysis in R for identifying possible differential exon splicing events

11 months ago to

Wei Shi • 2.8k

Australia

For: Experimental data package 'seqc'

11 months ago to

igor • 20

United States

For: DiffBind differential binding normalization with different levels of binding

11 months ago to

florian.hahne@novartis.com • 1.5k

Switzerland

For: displaying coverage RNAseq Gviz

11 months ago to

Angel • 40

Berlin

For: Loading the necessary libraries in R

12 months ago to

mrodrigues.fernanda • 10

University of Illinois, Urbana-Champaign

For: sva + egdeR - differential expression analysis - RNA-seq data

12 months ago to

alakatos • 80

United States

For: Annotating limma Results with Gene Names for Affy Microarrays

12 months ago to

Jiang, Mike • 1.1k

(Private Address)

For: Help with flowCore

12 months ago to

erin.gill81 • 30

Canada

For: DESeq2 Error: rows did not converge in beta, labelled in mcols(object)$betaConv. Use larger maxit argument with nbinomWaldTest

12 months ago to

Stephen Henderson • 1.0k

For: heatmap colours

12 months ago to

enricoferrero • 560

United Kingdom

For: biomaRt proxy issues

12 months ago to

Gordon Smyth ♦ 33k

Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia

For: Filtering is not recommended with LIMMA?

12 months ago to

Rory Stark • 2.4k

CRUK, Cambridge, UK

For: a diffBind problem

12 months ago to

igor • 20

United States

For: minfi MethylationEPIC errors

12 months ago to

Gordon Smyth ♦ 33k

Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia

For: total count filter cutoff (edgeR)

13 months ago to

Assa Yeroslaviz • 1.4k

Munich, Germany

For: extract intensity values from AffyBatch

13 months ago to

Luo Weijun • 1.4k

United States

For: Pathview+GAGE workflow on RNA-seq data pathway analysis and visualization (was: Pathview published in Bioinformatics)

13 months ago to

riccardo • 40

For: DESeq2 and shrinkage of log2 fold changes

13 months ago to

Jon Bråte • 140

Norway

For: Rearrange dendrogram to match merged modules in WGCNA?

13 months ago to

Gordon Smyth ♦ 33k

Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia

For: Statistical power of limma vs mixed model approach to analyze microarray and differentialproteomics/peptidomics experiments and Poisson/binomial mixed models for RNAseq data

13 months ago to

d r • 150

Israel

For: GRanges DitancetoNearest query

13 months ago to

prp291 • 0

For: Deseq2 for RNAseq experiments without replicates

13 months ago to

Ramiro Magno • 90

CBMR, Faro, Portugal

For: [FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack

13 months ago to

Ugo Borello • 340

France

For: DESeq2 multifactorial formula

13 months ago to

svlachavas • 570

Greece/Athens/National Hellenic Research Foundation

For: Merge different datasets and perform differential expression analysis in limma

13 months ago to

svlachavas • 570

Greece/Athens/National Hellenic Research Foundation

For: Update R in Rstudio to specific version 3.2.1 in windows

13 months ago to

Jurat Shahidin • 60

Italy

For: Find overlap for more than 2 GRanges object simultaneously (reproducible example is updated) ?

13 months ago to

deut13 • 70

Germany

For: Error in GRanges: could not find symbol "recursive" in environment of the generic function

13 months ago to

Julie Zhu • 3.8k

United States

For: build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?

13 months ago to

Valerie Obenchain ♦♦ 6.4k

United States

For: merging VCF files

13 months ago to

Wolfgang Huber ♦ 13k

EMBL European Molecular Biology Laboratory

For: DESeq2

13 months ago to

Wolfgang Huber ♦ 13k

EMBL European Molecular Biology Laboratory

For: Bioconductor-related papers -- special F1000Research collection for Bioc2016

13 months ago to

predeus • 0

United States

For: GO.db installation error

13 months ago to

Dave Tang • 210

Australia/Perth/UWA

For: Unable to find an inherited method for function ‘exprs’

13 months ago to

bharata1803 • 20

Japan

For: DESeq2 Error NA values

13 months ago to

bharata1803 • 20

Japan

For: Calculate DESeq2 fold change of 1 gene to 1 of the sample

13 months ago to

svlachavas • 570

Greece/Athens/National Hellenic Research Foundation

For: Error and questions about clustering & ploting functions in r packages cluster and mclust regarding kmeans method

13 months ago to

Jenny Drnevich • 1.9k

United States

For: biocLite() upgrade issue when same package in 2 libraries

13 months ago to

Stephanie M. Gogarten • 540

University of Washington

For: Error in biocLite("BiocUpgrade") when trying to update to latest release

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 196 users visited in the last hour