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gravatar for Michael Love
6 months ago to
Michael Love24k
United States
For: A: Deseq2: RNA-seq and Negative binomial distribution
gravatar for Michael Love
6 months ago to
Michael Love24k
United States
For: A: DESeq2 baseMean values for each sample
gravatar for Hervé Pagès
6 months ago to
Hervé Pagès ♦♦ 14k
United States
For: A: resize (shrink/expand) GenomicRanges
gravatar for Michael Love
6 months ago to
Michael Love24k
United States
For: A: DESeq2 1.20.0 lfcshrink function
gravatar for Mike Smith
6 months ago to
Mike Smith3.8k
EMBL Heidelberg / de.NBI
For: A: Error: Bioconductor version '3.8' requires R version '3.5'
gravatar for Aaron Lun
6 months ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: Understanding contrasts limma
gravatar for Aaron Lun
6 months ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: goana limma- extract list of DE genes and genes in the enriched GO terms?
gravatar for Aaron Lun
6 months ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: cameraPR vs geneSetTest and ROAST/CAMERA in general
gravatar for Peter Langfelder
6 months ago to
United States
For: A: WGCNA - Signed vs signed hybrid networks
gravatar for Peter Langfelder
6 months ago to
United States
For: A: Theoretical WGCNA Question
gravatar for Gordon Smyth
7 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Removing continuous covariate effects in limma analysis
gravatar for Gordon Smyth
7 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How barcode-plot enrichment is calculated?
gravatar for Ryan C. Thompson
7 months ago to
The Scripps Research Institute, La Jolla, CA
For: A: Batch correction in DESeq2
gravatar for Hervé Pagès
7 months ago to
Hervé Pagès ♦♦ 14k
United States
For: A: how to extract "Gene type" from org.Mm.eg.db?
gravatar for Michael Love
8 months ago to
Michael Love24k
United States
For: A: DESeq2 1.20.0 lfcshrink function
gravatar for Gordon Smyth
8 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How barcode-plot enrichment is calculated?
gravatar for Gordon Smyth
8 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Removing continuous covariate effects in limma analysis
gravatar for Aaron Lun
8 months ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: Is Limma's removeBatchEffect() and log2() commutative?
gravatar for Aaron Lun
8 months ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: goana limma- extract list of DE genes and genes in the enriched GO terms?
gravatar for Thomas Maurel
9 months ago to
Thomas Maurel770
United Kingdom
For: A: biomaRt: no access to Ensembl_75 (GRCh37.p13)
gravatar for Gordon Smyth
9 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: conceptual question about FDR, FDR adjusted p-value and q-value
gravatar for Aaron Lun
10 months ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: Is Limma's removeBatchEffect() and log2() commutative?
gravatar for Gavin Kelly
11 months ago to
Gavin Kelly560
United Kingdom / London / Francis Crick Institute
For: A: extracting the genes associated with the clusters
gravatar for Aaron Lun
11 months ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: goana limma- extract list of DE genes and genes in the enriched GO terms?
gravatar for Aaron Lun
11 months ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: Is Limma's removeBatchEffect() and log2() commutative?
gravatar for Aaron Lun
13 months ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: Is Limma's removeBatchEffect() and log2() commutative?
gravatar for Aaron Lun
13 months ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: Continuous variable interaction with Groups in design matrix
gravatar for Michael Love
13 months ago to
Michael Love24k
United States
For: A: DESeq2 1.20.0 lfcshrink function
gravatar for Aaron Lun
2.0 years ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: Continuous variable interaction with Groups in design matrix
gravatar for Aaron Lun
2.0 years ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: Allele Specific Expression in DESeq2 or EdgeR
gravatar for Aaron Lun
2.0 years ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: limma batch question
gravatar for Aaron Lun
2.0 years ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: Understanding contrasts limma
gravatar for Aaron Lun
2.0 years ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: voom with combat
gravatar for Aaron Lun
2.0 years ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: limma Time Course Experiment with many time points
gravatar for Aaron Lun
2.0 years ago to
Aaron Lun24k
Cambridge, United Kingdom
For: A: Is Limma's removeBatchEffect() and log2() commutative?
gravatar for Gordon Smyth
2.0 years ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Gordon Smyth
2.0 years ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: RNA-Seq, generate batch-free count matrix
gravatar for Gordon Smyth
2.0 years ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: Differences between limma voom E values and edgeR cpm values?
gravatar for Gordon Smyth
2.0 years ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Do the outputs of Limma's competitive gene set methods (camera, romer) require a
gravatar for Michael Love
2.1 years ago to
Michael Love24k
United States
For: A: deseq2 filter the low counts
gravatar for Michael Love
2.1 years ago to
Michael Love24k
United States
For: A: DESeq2 Model Design

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