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gravatar for Aaron Lun
7 weeks ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
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7 weeks ago to
Levi Waldron790
CUNY Graduate School of Public Health and Health Policy, New York, NY
For: BioC2019 June 24-27 in New York City
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How barcode-plot enrichment is calculated?
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10 weeks ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: BH vs BY in p.adjust + FDR interpretation
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun21k
Cambridge, United Kingdom
For: European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Ryan C. Thompson
11 weeks ago to
The Scripps Research Institute, La Jolla, CA
For: A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
gravatar for Aaron Lun
3 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: BH vs BY in p.adjust + FDR interpretation
gravatar for Aaron Lun
5 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
5 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Is Limma's removeBatchEffect() and log2() commutative?
gravatar for Aaron Lun
5 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Michael Love
5 months ago to
Michael Love20k
United States
For: New function lfcShrink() in DESeq2
gravatar for Michael Love
5 months ago to
Michael Love20k
United States
For: A: How does DESeq2 handle zero counts in one condition?
gravatar for Michael Love
5 months ago to
Michael Love20k
United States
For: A: DESeq2 1.20.0 lfcshrink function
gravatar for Wolfgang Huber
5 months ago to
EMBL European Molecular Biology Laboratory
For: exprs function - clash with dplyr
gravatar for Thomas Maurel
7 months ago to
Thomas Maurel750
United Kingdom
For: A: biomaRt: no access to Ensembl_75 (GRCh37.p13)
gravatar for James W. MacDonald
16 months ago to
United States
For: A: Error in Gviz | IdeogramTrack
gravatar for James W. MacDonald
16 months ago to
United States
For: A: Normalization factor in TMM method
gravatar for James W. MacDonald
16 months ago to
United States
For: A: Error in Gviz | IdeogramTrack
gravatar for Valerie Obenchain
16 months ago to
Valerie Obenchain ♦♦ 6.6k
United States
For: Bioconductor 3.7 is released
gravatar for Valerie Obenchain
16 months ago to
Valerie Obenchain ♦♦ 6.6k
United States
For: Bioconductor 3.5 is released
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: duplicateCorrelation and Pearson Correlation
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Using edgeR or DESeq2 to analyze allele-specific expression?
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Combining newer/older RNAseq data, batch correcting
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Is Limma's removeBatchEffect() and log2() commutative?
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: edger glmQLFit mix glmLRT
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: voom with combat
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Continuous variable interaction with Groups in design matrix
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: goana limma- extract list of DE genes and genes in the enriched GO terms?
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: limma Time Course Experiment with many time points
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Understanding contrasts limma
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: How does edgeR compare to lme4?
gravatar for Aaron Lun
16 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: DE for genes with very low counts using limma.
gravatar for Gordon Smyth
16 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: BH vs BY in p.adjust + FDR interpretation
gravatar for Gordon Smyth
16 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: Differences between limma voom E values and edgeR cpm values?
gravatar for Gordon Smyth
16 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Do the outputs of Limma's competitive gene set methods (camera, romer) require a
gravatar for Gordon Smyth
16 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Gordon Smyth
16 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Differential expression of RNA-seq data using limma and voom()
gravatar for Gordon Smyth
16 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: RNA-Seq, generate batch-free count matrix
gravatar for Gordon Smyth
16 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Fit a multinomial to RNA-seq count data

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