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gravatar for Michael Love
15 days ago to
Michael Love21k
United States
For: A: DESeq2 baseMean values for each sample
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7 weeks ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How barcode-plot enrichment is calculated?
gravatar for Gordon Smyth
7 weeks ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Removing continuous covariate effects in limma analysis
gravatar for James W. MacDonald
7 weeks ago to
United States
For: A: Effect of lfcThreshold on p-value in DESeq2
gravatar for Michael Love
11 weeks ago to
Michael Love21k
United States
For: A: How does DESeq2 handle zero counts in one condition?
gravatar for Gordon Smyth
11 weeks ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How barcode-plot enrichment is calculated?
gravatar for Ryan C. Thompson
12 weeks ago to
The Scripps Research Institute, La Jolla, CA
For: A: Finding DE genes from RNA-seq data
gravatar for Aaron Lun
3 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
3 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Levi Waldron
3 months ago to
Levi Waldron820
CUNY Graduate School of Public Health and Health Policy, New York, NY
For: BioC2019 June 24-27 in New York City
gravatar for Gordon Smyth
4 months ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Gordon Smyth
4 months ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How barcode-plot enrichment is calculated?
gravatar for Gordon Smyth
4 months ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: BH vs BY in p.adjust + FDR interpretation
gravatar for Aaron Lun
4 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
4 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Aaron Lun
4 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
gravatar for Ryan C. Thompson
4 months ago to
The Scripps Research Institute, La Jolla, CA
For: A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
gravatar for Aaron Lun
5 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Gordon Smyth
5 months ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Gordon Smyth
5 months ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: BH vs BY in p.adjust + FDR interpretation
gravatar for Aaron Lun
7 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Aaron Lun
7 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
7 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Is Limma's removeBatchEffect() and log2() commutative?
gravatar for Michael Love
7 months ago to
Michael Love21k
United States
For: New function lfcShrink() in DESeq2
gravatar for Michael Love
7 months ago to
Michael Love21k
United States
For: A: How does DESeq2 handle zero counts in one condition?
gravatar for Michael Love
7 months ago to
Michael Love21k
United States
For: A: DESeq2 1.20.0 lfcshrink function
gravatar for Wolfgang Huber
7 months ago to
EMBL European Molecular Biology Laboratory
For: exprs function - clash with dplyr
gravatar for Thomas Maurel
9 months ago to
Thomas Maurel770
United Kingdom
For: A: biomaRt: no access to Ensembl_75 (GRCh37.p13)
gravatar for James W. MacDonald
19 months ago to
United States
For: A: Error in Gviz | IdeogramTrack
gravatar for James W. MacDonald
19 months ago to
United States
For: A: Normalization factor in TMM method
gravatar for James W. MacDonald
19 months ago to
United States
For: A: Error in Gviz | IdeogramTrack
gravatar for Valerie Obenchain
19 months ago to
United States
For: Bioconductor 3.7 is released
gravatar for Valerie Obenchain
19 months ago to
United States
For: Bioconductor 3.5 is released
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: limma Time Course Experiment with many time points
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: duplicateCorrelation and Pearson Correlation
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: edger glmQLFit mix glmLRT
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Using edgeR or DESeq2 to analyze allele-specific expression?
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Combining newer/older RNAseq data, batch correcting
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Is Limma's removeBatchEffect() and log2() commutative?
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: voom with combat
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
gravatar for Aaron Lun
19 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Continuous variable interaction with Groups in design matrix

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