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Awarded 1123 times for: created an answer with at least 3 up-votes

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gravatar for Gordon Smyth
6 weeks ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How barcode-plot enrichment is calculated?
gravatar for Aaron Lun
11 weeks ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Building contrasts for combined treatment groups to compare to a control
gravatar for Aaron Lun
11 weeks ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Aaron Lun
11 weeks ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Limma Voom duplicateCorrelation Design
gravatar for Aaron Lun
11 weeks ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: EdgeR - blocking for multiple factors at once - Errors
gravatar for Aaron Lun
11 weeks ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: applying voom + limma to a block factor design in RNA-seq experiment
gravatar for Aaron Lun
11 weeks ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Gordon Smyth
11 weeks ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: ANOVA-like test via treat() in limma
gravatar for Gordon Smyth
11 weeks ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How barcode-plot enrichment is calculated?
gravatar for erikfas
11 weeks ago to
erikfas30
For: A: Importing VCFs in seqCAT
gravatar for James W. MacDonald
3 months ago to
United States
For: A: Probe to gene id conversion
gravatar for Aaron Lun
3 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Building contrasts for combined treatment groups to compare to a control
gravatar for Aaron Lun
3 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: applying voom + limma to a block factor design in RNA-seq experiment
gravatar for Aaron Lun
3 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: EdgeR - blocking for multiple factors at once - Errors
gravatar for Aaron Lun
3 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Aaron Lun
3 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Aaron Lun
3 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for FDG
4 months ago to
FDG70
For: A: RSVSim insertions from chr1 to chr2
gravatar for Thomas Maurel
4 months ago to
Thomas Maurel770
United Kingdom
For: A: how to use biomaRt with ensembl build 37
gravatar for Aaron Lun
4 months ago to
Aaron Lun22k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Michael Love
4 months ago to
Michael Love22k
United States
For: A: DESeq2 baseMean values for each sample
gravatar for Michael Love
4 months ago to
Michael Love22k
United States
For: A: What doest this p.value distribution mean?
gravatar for Michael Love
4 months ago to
Michael Love22k
United States
For: A: DESeq2 why estimate dispersion on log scale
gravatar for Michael Love
4 months ago to
Michael Love22k
United States
For: A: How does DESeq2 handle zero counts in one condition?
gravatar for Peter Hickey
4 months ago to
Peter Hickey440
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: From RleList to RleArray
gravatar for Rory Stark
4 months ago to
Rory Stark2.7k
CRUK, Cambridge, UK
For: A: Work with GRanges objects in DiffBind
gravatar for Rory Stark
4 months ago to
Rory Stark2.7k
CRUK, Cambridge, UK
For: A: diffbind finding not differential site
gravatar for Ryan C. Thompson
4 months ago to
The Scripps Research Institute, La Jolla, CA
For: A: Voom transformation from counts and normalization to negative values
gravatar for davide risso
4 months ago to
davide risso810
Weill Cornell Medicine
For: A: RUVseq PCA on raw data, whereas DESeq suggests stabilization
gravatar for Gord Brown
4 months ago to
Gord Brown590
United Kingdom
For: A: Counting Raw Reads with DiffBind
gravatar for Hervé Pagès
5 months ago to
Hervé Pagès ♦♦ 13k
United States
For: A: Extracting Coordinates of startcodon from Grangeslist
gravatar for Gordon Smyth
5 months ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Analysis of pathways using edgeR
gravatar for Gordon Smyth
5 months ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: ANOVA-like test via treat() in limma
gravatar for Gordon Smyth
5 months ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
gravatar for Gordon Smyth
5 months ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Trouble with Tximport for edgeR
gravatar for Gordon Smyth
5 months ago to
Gordon Smyth36k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e

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