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Awarded 1014 times for: created an answer with at least 3 up-votes

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gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Using limma to model gene expression changes with age
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Subsetting ELists and Applying sva to Iterative Differential Gene Expression Tes
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Analysis of pathways using edgeR
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: ANOVA-like test via treat() in limma
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Trouble with Tximport for edgeR
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Nanostring analysis with limma
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: using duplicateCorrelation with limma+voom for RNA-seq data
gravatar for Lluís R
10 weeks ago to
Lluís R370
European Union
For: A: Where can I use the VSN source code in C++?
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: Paired factorial design model in limma
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: Building contrasts for combined treatment groups to compare to a control
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Wei Shi
10 weeks ago to
Wei Shi2.9k
Australia
For: A: featureCounts for multiple features
gravatar for James W. MacDonald
10 weeks ago to
United States
For: A: Retrieving all genes related a go term
gravatar for Laurent Gatto
10 weeks ago to
Laurent Gatto980
United Kingdom
For: A: Selecting genes based on expressional variance
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: calculate foldchange after rlogTransformation
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: Cross-species RNA-seq with DESeq2
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: What doest this p.value distribution mean?
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: DESeq2 why estimate dispersion on log scale
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: How does DESeq2 handle zero counts in one condition?
gravatar for Levi Waldron
10 weeks ago to
Levi Waldron600
CUNY Graduate School of Public Health and Health Policy, New York, NY
For: A: Integrated genomic analysis - mRNA, proteomics, flow, miRNA-seq
gravatar for Levi Waldron
10 weeks ago to
Levi Waldron600
CUNY Graduate School of Public Health and Health Policy, New York, NY
For: A: Reproducibility of MultiDataSet Comparison
gravatar for Ryan C. Thompson
11 weeks ago to
The Scripps Research Institute, La Jolla, CA
For: A: What's the relationship between "design" and "contrasts"?
gravatar for Ryan C. Thompson
11 weeks ago to
The Scripps Research Institute, La Jolla, CA
For: A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
gravatar for Michael Lawrence
11 weeks ago to
United States
For: A: setdiff for GenomicRanges
gravatar for Wolfgang Huber
11 weeks ago to
EMBL European Molecular Biology Laboratory
For: A: package specifically dedicated to a manuscript
gravatar for Aaron Lun
3 months ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Analysis of pathways using edgeR
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Hervé Pagès
3 months ago to
Hervé Pagès ♦♦ 13k
United States
For: A: Extracting Coordinates of startcodon from Grangeslist
gravatar for Ryan C. Thompson
3 months ago to
The Scripps Research Institute, La Jolla, CA
For: A: What's the relationship between "design" and "contrasts"?
gravatar for davide risso
3 months ago to
davide risso740
Weill Cornell Medicine
For: A: RUVseq PCA on raw data, whereas DESeq suggests stabilization
gravatar for JP Carter
4 months ago to
JP Carter40
Nashville, TN
For: C: biomart R code cannot retrieve gene symbol
gravatar for Simon Anders
4 months ago to
Simon Anders3.5k
Zentrum für Molekularbiologie, Universität Heidelberg
For: A: P values from Deseq Analysis
gravatar for Oskar
13 months ago to
Oskar40
For: A: readCufflinks problem with extdata

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