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Awarded 1123 times for: created an answer with at least 3 up-votes

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gravatar for Gordon Smyth
3 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How barcode-plot enrichment is calculated?
gravatar for Aaron Lun
4 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: Building contrasts for combined treatment groups to compare to a control
gravatar for Aaron Lun
4 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Aaron Lun
4 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: Limma Voom duplicateCorrelation Design
gravatar for Aaron Lun
4 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: EdgeR - blocking for multiple factors at once - Errors
gravatar for Aaron Lun
4 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: applying voom + limma to a block factor design in RNA-seq experiment
gravatar for Aaron Lun
4 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Gordon Smyth
4 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: ANOVA-like test via treat() in limma
gravatar for Gordon Smyth
4 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How barcode-plot enrichment is calculated?
gravatar for erikfas
4 months ago to
erikfas30
For: A: Importing VCFs in seqCAT
gravatar for James W. MacDonald
5 months ago to
United States
For: A: Probe to gene id conversion
gravatar for Aaron Lun
5 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: Building contrasts for combined treatment groups to compare to a control
gravatar for Aaron Lun
5 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: applying voom + limma to a block factor design in RNA-seq experiment
gravatar for Aaron Lun
5 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: EdgeR - blocking for multiple factors at once - Errors
gravatar for Aaron Lun
5 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Aaron Lun
5 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Aaron Lun
5 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for FDG
5 months ago to
FDG70
For: A: RSVSim insertions from chr1 to chr2
gravatar for Thomas Maurel
6 months ago to
Thomas Maurel770
United Kingdom
For: A: how to use biomaRt with ensembl build 37
gravatar for Aaron Lun
6 months ago to
Aaron Lun23k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Michael Love
6 months ago to
Michael Love22k
United States
For: A: DESeq2 baseMean values for each sample
gravatar for Michael Love
6 months ago to
Michael Love22k
United States
For: A: What doest this p.value distribution mean?
gravatar for Michael Love
6 months ago to
Michael Love22k
United States
For: A: DESeq2 why estimate dispersion on log scale
gravatar for Michael Love
6 months ago to
Michael Love22k
United States
For: A: How does DESeq2 handle zero counts in one condition?
gravatar for Peter Hickey
6 months ago to
Peter Hickey440
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: From RleList to RleArray
gravatar for Rory Stark
6 months ago to
Rory Stark2.8k
CRUK, Cambridge, UK
For: A: Work with GRanges objects in DiffBind
gravatar for Rory Stark
6 months ago to
Rory Stark2.8k
CRUK, Cambridge, UK
For: A: diffbind finding not differential site
gravatar for Ryan C. Thompson
6 months ago to
The Scripps Research Institute, La Jolla, CA
For: A: Voom transformation from counts and normalization to negative values
gravatar for davide risso
6 months ago to
davide risso810
Weill Cornell Medicine
For: A: RUVseq PCA on raw data, whereas DESeq suggests stabilization
gravatar for Gord Brown
6 months ago to
Gord Brown590
United Kingdom
For: A: Counting Raw Reads with DiffBind
gravatar for Hervé Pagès
7 months ago to
Hervé Pagès ♦♦ 13k
United States
For: A: Extracting Coordinates of startcodon from Grangeslist
gravatar for Gordon Smyth
7 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Analysis of pathways using edgeR
gravatar for Gordon Smyth
7 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: ANOVA-like test via treat() in limma
gravatar for Gordon Smyth
7 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
gravatar for Gordon Smyth
7 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Trouble with Tximport for edgeR
gravatar for Gordon Smyth
7 months ago to
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e

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