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gravatar for James W. MacDonald
6 weeks ago to
United States
For: A: Probe to gene id conversion
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6 weeks ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: applying voom + limma to a block factor design in RNA-seq experiment
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6 weeks ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: EdgeR - blocking for multiple factors at once - Errors
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6 weeks ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
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6 weeks ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Building contrasts for combined treatment groups to compare to a control
gravatar for Aaron Lun
6 weeks ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for FDG
7 weeks ago to
FDG70
For: A: RSVSim insertions from chr1 to chr2
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Michael Love
10 weeks ago to
Michael Love20k
United States
For: A: What doest this p.value distribution mean?
gravatar for Michael Love
10 weeks ago to
Michael Love20k
United States
For: A: DESeq2 baseMean values for each sample
gravatar for Michael Love
10 weeks ago to
Michael Love20k
United States
For: A: DESeq2 why estimate dispersion on log scale
gravatar for Michael Love
10 weeks ago to
Michael Love20k
United States
For: A: How does DESeq2 handle zero counts in one condition?
gravatar for Peter Hickey
10 weeks ago to
Peter Hickey440
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: From RleList to RleArray
gravatar for Rory Stark
10 weeks ago to
Rory Stark2.6k
CRUK, Cambridge, UK
For: A: Work with GRanges objects in DiffBind
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10 weeks ago to
Rory Stark2.6k
CRUK, Cambridge, UK
For: A: diffbind finding not differential site
gravatar for Ryan C. Thompson
11 weeks ago to
The Scripps Research Institute, La Jolla, CA
For: A: Voom transformation from counts and normalization to negative values
gravatar for davide risso
11 weeks ago to
davide risso790
Weill Cornell Medicine
For: A: RUVseq PCA on raw data, whereas DESeq suggests stabilization
gravatar for Gord Brown
11 weeks ago to
Gord Brown580
United Kingdom
For: A: Counting Raw Reads with DiffBind
gravatar for Hervé Pagès
12 weeks ago to
Hervé Pagès ♦♦ 13k
United States
For: A: Extracting Coordinates of startcodon from Grangeslist
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: ANOVA-like test via treat() in limma
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Analysis of pathways using edgeR
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Trouble with Tximport for edgeR
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth35k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for shepherl
3 months ago to
shepherl ♦♦ 890
United States
For: A: Is there any annotation package for MSEA?
gravatar for Michael Love
3 months ago to
Michael Love20k
United States
For: A: How does DESeq2 handle zero counts in one condition?
gravatar for Michael Love
3 months ago to
Michael Love20k
United States
For: A: DESeq2 baseMean values for each sample
gravatar for Aaron Lun
3 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Aaron Lun
3 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: applying voom + limma to a block factor design in RNA-seq experiment
gravatar for Aaron Lun
3 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
3 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Building contrasts for combined treatment groups to compare to a control
gravatar for James W. MacDonald
3 months ago to
United States
For: A: Retrieving all genes related a go term
gravatar for Ryan C. Thompson
3 months ago to
The Scripps Research Institute, La Jolla, CA
For: A: Voom transformation from counts and normalization to negative values
gravatar for Valerie Obenchain
3 months ago to
Valerie Obenchain ♦♦ 6.7k
United States
For: A: about collapsed and expanded vcf file
gravatar for Guangchuang Yu
4 months ago to
Guangchuang Yu1.1k
China/Guangzhou/Southern Medical University
For: A: How to do simple Fisher' exact test for overlapped genomic interval in R?
gravatar for Aaron Lun
4 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: Building contrasts for combined treatment groups to compare to a control
gravatar for Aaron Lun
4 months ago to
Aaron Lun21k
Cambridge, United Kingdom
For: A: applying voom + limma to a block factor design in RNA-seq experiment

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