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gravatar for Aaron Lun
5 weeks ago to
Aaron Lun19k
Cambridge, United Kingdom
For: A: Filtering for ATAC-seq
gravatar for Gordon Smyth
5 weeks ago to
Gordon Smyth33k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Gordon Smyth
5 weeks ago to
Gordon Smyth33k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Analysis of pathways using edgeR
gravatar for Hervé Pagès
5 weeks ago to
Hervé Pagès ♦♦ 13k
United States
For: A: Extracting Coordinates of startcodon from Grangeslist
gravatar for Ryan C. Thompson
5 weeks ago to
The Scripps Research Institute, La Jolla, CA
For: A: What's the relationship between "design" and "contrasts"?
gravatar for davide risso
5 weeks ago to
davide risso720
Weill Cornell Medicine
For: A: RUVseq PCA on raw data, whereas DESeq suggests stabilization
gravatar for JP Carter
12 weeks ago to
JP Carter40
Nashville, TN
For: C: biomart R code cannot retrieve gene symbol
gravatar for Oskar
11 months ago to
Oskar40
For: A: readCufflinks problem with extdata
gravatar for James W. MacDonald
12 months ago to
United States
For: A: Normalization factor in TMM method
gravatar for James W. MacDonald
12 months ago to
United States
For: A: Filtering absent transcripts from Gene ST array
gravatar for James W. MacDonald
12 months ago to
United States
For: A: limma - F-test for many condition
gravatar for James W. MacDonald
12 months ago to
United States
For: A: Glimma Interactive plots for RNAseq
gravatar for James W. MacDonald
12 months ago to
United States
For: A: Error in Gviz | IdeogramTrack
gravatar for James W. MacDonald
12 months ago to
United States
For: A: Retrieving all genes related a go term
gravatar for Mike Smith
12 months ago to
Mike Smith2.7k
EMBL Heidelberg / de.NBI
For: A: HDF5 reading speed
gravatar for Mike Smith
12 months ago to
Mike Smith2.7k
EMBL Heidelberg / de.NBI
For: A: biomaRT GO-ID retreival showing different genes than AmiGO
gravatar for Mike Smith
12 months ago to
Mike Smith2.7k
EMBL Heidelberg / de.NBI
For: A: Scan error using biomart with version option
gravatar for Mike Smith
12 months ago to
Mike Smith2.7k
EMBL Heidelberg / de.NBI
For: A: Please use the function 'listAttributes' to get valid attribute names
gravatar for Mike Smith
12 months ago to
Mike Smith2.7k
EMBL Heidelberg / de.NBI
For: A: xcms and xcmsSet no longer works on my Mac
gravatar for Mike Smith
12 months ago to
Mike Smith2.7k
EMBL Heidelberg / de.NBI
For: A: biomaRt: drerio_gene_ensembl dataset missing
gravatar for Axel Klenk
12 months ago to
Axel Klenk830
Switzerland
For: A: Limma un moderated t-test
gravatar for Peter Hickey
12 months ago to
Peter Hickey370
Johns Hopkins University, Baltimore, USA
For: A: From RleList to RleArray
gravatar for Peter Hickey
12 months ago to
Peter Hickey370
Johns Hopkins University, Baltimore, USA
For: A: Error when generate mapToGenome
gravatar for Valerie Obenchain
12 months ago to
Valerie Obenchain ♦♦ 6.5k
United States
For: A: about collapsed and expanded vcf file
gravatar for Valerie Obenchain
12 months ago to
Valerie Obenchain ♦♦ 6.5k
United States
For: A: GenomicAlignments is too slow with summarizeOverlaps
gravatar for Aaron Lun
12 months ago to
Aaron Lun19k
Cambridge, United Kingdom
For: A: DE for genes with very low counts using limma.
gravatar for Aaron Lun
12 months ago to
Aaron Lun19k
Cambridge, United Kingdom
For: A: LogFC: how do you determine the cutoff for differentially expressed genes?
gravatar for Aaron Lun
12 months ago to
Aaron Lun19k
Cambridge, United Kingdom
For: A: Help with design matrix for two cell types, multiple treatments
gravatar for Aaron Lun
12 months ago to
Aaron Lun19k
Cambridge, United Kingdom
For: A: Strand-aware CSAW analysis
gravatar for Aaron Lun
12 months ago to
Aaron Lun19k
Cambridge, United Kingdom
For: A: csaw - workflow to incorporate input/control samples?
gravatar for Aaron Lun
12 months ago to
Aaron Lun19k
Cambridge, United Kingdom
For: A: edgeR - MDS Plot for Count Data
gravatar for Aaron Lun
12 months ago to
Aaron Lun19k
Cambridge, United Kingdom
For: A: Multi-level experiment with limma
gravatar for Aaron Lun
12 months ago to
Aaron Lun19k
Cambridge, United Kingdom
For: A: Can featurecounts count number of mapped reads rapidly in arbitrary regions?
gravatar for Aaron Lun
12 months ago to
Aaron Lun19k
Cambridge, United Kingdom
For: A: Combining newer/older RNAseq data, batch correcting

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