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gravatar for Martin Morgan
9 months ago to
Martin Morgan ♦♦ 23k
United States
For: C: Best alternative annotation package to BiomaRt
gravatar for Michael Lawrence
9 months ago to
United States
For: C: Importing Gene Symbols with makeTxDbFromGFF
gravatar for Ryan C. Thompson
9 months ago to
The Scripps Research Institute, La Jolla, CA
For: C: limma lmFit coefficients and p-values
gravatar for Jinsong Zhang
17 months ago to
USA/St. Louis
For: C: exprs function - clash with dplyr
gravatar for Martin Morgan
17 months ago to
Martin Morgan ♦♦ 23k
United States
For: C: Eliminating repetitive calls to ExperimentHub
gravatar for Simon Anders
19 months ago to
Simon Anders3.6k
Zentrum für Molekularbiologie, Universität Heidelberg
For: C: DESeq2: interaction term as in limma
gravatar for Gordon Smyth
2.3 years ago to
Gordon Smyth39k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: C: How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
gravatar for Rory Stark
2.3 years ago to
Rory Stark2.9k
CRUK, Cambridge, UK
For: C: Diffbind - What exactly is a "consensus" peak set?
gravatar for shepherl
2.4 years ago to
shepherl ♦♦ 1.6k
United States
For: C: Bioconductor packages now each have a DOI.
gravatar for Aaron Lun
2.4 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: Filtering lowly expressed genes in voom-limma analysis
gravatar for Guido Hooiveld
2.4 years ago to
Guido Hooiveld2.5k
Wageningen University, Wageningen, the Netherlands
For: C: Testing for DE genes
gravatar for Aaron Lun
2.5 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: Filtering lowly expressed genes in voom-limma analysis
gravatar for Gordon Smyth
2.6 years ago to
Gordon Smyth39k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: C: How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
gravatar for Gordon Smyth
2.6 years ago to
Gordon Smyth39k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: C: How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
gravatar for hioymaci
3.3 years ago to
hioymaci30
For: C: Can't upgrade to Bioconductor 3.3?
gravatar for Aaron Lun
3.5 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: edger, trended or common dispersion
gravatar for Aaron Lun
3.5 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: Limma Elist subsetting
gravatar for Aaron Lun
3.5 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: Method for batch correction
gravatar for Aaron Lun
3.5 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: DESeq2 for ChIP-seq differential peaks
gravatar for Aaron Lun
3.5 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: Normalization methodology in DESeq/DESeq2 vs edgeR
gravatar for Ryan C. Thompson
3.5 years ago to
The Scripps Research Institute, La Jolla, CA
For: C: How to use removeBatchEffect for removing effect of multiple confounding variabl
gravatar for Ryan C. Thompson
3.5 years ago to
The Scripps Research Institute, La Jolla, CA
For: C: How to remove dublicate probesets matching to the same gene, after toptable in o
gravatar for James W. MacDonald
3.5 years ago to
United States
For: C: What is logFC and "B" in methylation analysis ??
gravatar for Aaron Lun
3.5 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: Method for batch correction
gravatar for Aaron Lun
3.5 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: Method for batch correction
gravatar for Simon Anders
3.9 years ago to
Simon Anders3.6k
Zentrum für Molekularbiologie, Universität Heidelberg
For: C: Normalization methodology in DESeq/DESeq2 vs edgeR
gravatar for Aaron Lun
3.9 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: edger, trended or common dispersion
gravatar for Gordon Smyth
3.9 years ago to
Gordon Smyth39k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: C: Normalization methodology in DESeq/DESeq2 vs edgeR
gravatar for Aaron Lun
3.9 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: Normalization methodology in DESeq/DESeq2 vs edgeR
gravatar for Aaron Lun
4.0 years ago to
Aaron Lun25k
Cambridge, United Kingdom
For: C: edgeR Normalization Method
gravatar for Ryan C. Thompson
4.0 years ago to
The Scripps Research Institute, La Jolla, CA
For: C: pass limma contrast matrix variable
gravatar for Ryan C. Thompson
4.0 years ago to
The Scripps Research Institute, La Jolla, CA
For: C: How to remove dublicate probesets matching to the same gene, after toptable in o
gravatar for Ryan C. Thompson
4.3 years ago to
The Scripps Research Institute, La Jolla, CA
For: C: How to remove dublicate probesets matching to the same gene, after toptable in o

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