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Awarded 2008 times for: created an answer that has been accepted

Recently awarded to

gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Filtering Rna-seq counts
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Performing differential gene analysis on RT PCR experimental data
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Trouble with Tximport for edgeR
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: ANOVA-like test via treat() in limma
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Finding genes respond differently to treatment between many genotype comparison
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: another contrast question - edgeR + scRNA-seq + timecourse
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Limma - how to manage huge differences in library sizes
gravatar for Gordon Smyth
10 weeks ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How to plot MD plot in limma
gravatar for Axel Klenk
10 weeks ago to
Axel Klenk920
Switzerland
For: A: Identification of DEGs through limma analysis
gravatar for Martin Morgan
10 weeks ago to
Martin Morgan ♦♦ 22k
United States
For: A: How to get chip information from annotation databases
gravatar for Martin Morgan
10 weeks ago to
Martin Morgan ♦♦ 22k
United States
For: A: Difficulty extending ExpressionSet
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: column nubering plotMDS
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: adding a description column to glmTreat output
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: how to calculate the logFC value
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: Building contrasts for combined treatment groups to compare to a control
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: edgeR normalisation factors different between experimental groups
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: How to extract genes with greatest BCV?
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
10 weeks ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: Paired factorial design model in limma
gravatar for Mike Smith
10 weeks ago to
Mike Smith2.8k
EMBL Heidelberg / de.NBI
For: A: Update from developers branch of bioconductor packages
gravatar for Wei Shi
10 weeks ago to
Wei Shi2.9k
Australia
For: A: featureCounts for multiple features
gravatar for James W. MacDonald
10 weeks ago to
United States
For: A: blastn for selected database and/or organism
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: Age covariate continuous vs. categorical
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: DESEQ2 design with multiple conditions
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: Post-processing RNA-Seq after tximport
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: DESeq2 why estimate dispersion on log scale
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: DESeq2 confounding cartridge
gravatar for Michael Love
10 weeks ago to
Michael Love19k
United States
For: A: Get release date for version of DESeq2
gravatar for shepherl
10 weeks ago to
shepherl ♦♦ 650
United States
For: A: survcomp package - censor missing
gravatar for davide risso
10 weeks ago to
davide risso740
Weill Cornell Medicine
For: A: RUVseq PCA on raw data, whereas DESeq suggests stabilization
gravatar for Levi Waldron
10 weeks ago to
Levi Waldron600
CUNY Graduate School of Public Health and Health Policy, New York, NY
For: A: Gene set enrichment analysis
gravatar for tiagochst
10 weeks ago to
tiagochst130
Brazil - University of São Paulo/ Los Angeles - Cedars-Sinai Medical Center
For: A: Getting the metadata for a RNA-seq sample from TCGA when you have the uuid
gravatar for Hervé Pagès
10 weeks ago to
Hervé Pagès ♦♦ 13k
United States
For: A: Extracting Coordinates of startcodon from Grangeslist
gravatar for Ryan C. Thompson
11 weeks ago to
The Scripps Research Institute, La Jolla, CA
For: A: Limma validity for only hundreds of genes/metabolites
gravatar for Michael Lawrence
11 weeks ago to
United States
For: A: Detecting Overlaps within Grange Object
gravatar for Michael Lawrence
11 weeks ago to
United States
For: A: Features within 2kb window, but with resampling
gravatar for Wolfgang Huber
11 weeks ago to
EMBL European Molecular Biology Laboratory
For: A: Using DESeq2 normalisation method on a tximport list of matrices without sample
gravatar for Rory Stark
11 weeks ago to
Rory Stark2.5k
CRUK, Cambridge, UK
For: A: MA plot DiffBind in ggplot2
gravatar for Robert Castelo
12 weeks ago to
Robert Castelo2.2k
Spain/Barcelona/Universitat Pompeu Fabra
For: A: retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsist
gravatar for Peter Hickey
3 months ago to
Peter Hickey380
Johns Hopkins University, Baltimore, USA
For: A: t-statistic cutoff for finding DMRs with bsseq
gravatar for Aaron Lun
3 months ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: Building contrasts for combined treatment groups to compare to a control
gravatar for Aaron Lun
3 months ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: adding a description column to glmTreat output
gravatar for Aaron Lun
3 months ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: Representvie gene expression value in one condition with several replicates
gravatar for Aaron Lun
3 months ago to
Aaron Lun20k
Cambridge, United Kingdom
For: A: how to calculate the logFC value
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: Why different filtering criteria using CPM to filter the RNA-seq count data in e
gravatar for Gordon Smyth
3 months ago to
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
For: A: How to plot MD plot in limma

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