package or namespace load failed for TCGAbiolinks
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@jasonyijialin-13928
Last seen 4.4 years ago

I am using R version 3.4.1 (2017-06-30), Bioconductor 3.5 and RStudio to use TCGAbiolinks package.   

source("https://bioconductor.org/biocLite.R")
biocLite("TCGAbiolinks")

Above are the code I used to install TCGAbiolinks package, but when I enter library(TCGAbiolinks)

The error showed up as

Error: package or namespace load failed for ‘TCGAbiolinks’:
 object ‘rbind.gtable’ is not exported by 'namespace:gridExtra'

Could anyone help solve this problem?

Thanks

tcgabiolinks • 2.2k views
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Mike Smith ★ 5.4k
@mike-smith
Last seen 7 hours ago
EMBL Heidelberg / de.NBI

It looks like this function was renamed in gridExtra two days ago, see https://cran.r-project.org/web/packages/gridExtra/news.html

I guess it will take the TCGAbiolinks maintainer a couple of days to update the relevant lines, and get a new release through the BioC build system.  In the meantime, maybe you can manually install the previous version of gridExtra (version 2.2.1) and ignore requests to update it until a patch to TCGAbiolinks is released too.

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I have solved the problem,Thank you very much.

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Thank you so much! I will wait for TCGAbiolinks maintainer to update their package.

 

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Thanks, I have also faced this problem and this solved it!

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sechenmo • 0
@sechenmo-13929
Last seen 3.6 years ago

I have the same problem.

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lji0428 • 0
@lji0428-13949
Last seen 4.4 years ago

Hi all, R newbie here. Any kind soul willing to provide the code for installing gridExtra_2.2.1? I'm using Rstudio.

 

Thanks so much

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thank you so much!

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lji0428 • 0
@lji0428-13949
Last seen 4.4 years ago

Unfortunately, I'm still getting the error message (see below) even after I've installed gridExtra_2.0.0 successfully when I try to then call library(TCGAbiolinks). I guess I'll have to wait for the TCGAbiolinks to be updated too....

 

Error: package or namespace load failed for ‘TCGAbiolinks’:
 object ‘rbind.gtable’ is not exported by 'namespace:gridExtra'"

 

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Yes until TCGAbiolinks updates their NAMESPACE file, this ERROR will occur.  

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wenhuo hu ▴ 200
@wenhuo-hu-5208
Last seen 3.6 years ago
United States

Just in case someone is still bothered by this:

Install the TCGAbiolinks from the github solved this problem. It applears github has the more updated version. 

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