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Question: Filtering replicated genes
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gravatar for Sanches
9 weeks ago by
Sanches0
Sanches0 wrote:

Hi everybody,

Let me ask you all a question.

What is the better way to perform a filter from my microarray data? 

If I use the UniProt ID to filter replicated genes, is it correct?

Thanks in advances

 

ADD COMMENTlink modified 9 weeks ago by Gordon Smyth32k • written 9 weeks ago by Sanches0
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gravatar for Gordon Smyth
9 weeks ago by
Gordon Smyth32k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth32k wrote:

Why do you need to filter probes from you data? There is no need to filter duplicate UniProt IDs for a standard differential expression analysis.

Unless you have a strong need to remove duplicate probes (and you don't mention any reason), just don't do it. Simpler is usually better.

ADD COMMENTlink modified 9 weeks ago • written 9 weeks ago by Gordon Smyth32k
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