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Question: [RCircos] Examples flagged as not run
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gravatar for Marcel Ramos
8 weeks ago by
Marcel Ramos ♦♦ 60
United States
Marcel Ramos ♦♦ 60 wrote:

Dear Henry,

I've tried to run the examples under the RCircos.Reset.Core.Components {RCircos} page.

There are a couple of typos in the examples (in asterisks below):

rows <- which(ideo$BandColor=="red"**)**

RCircos.Reset.Plot.Param**e**ters(params)

Could you also please remove the ## Not run flag?

We want all packages to have runnable examples. 

Best regards,

Marcel


R version 3.4.0 Patched (2017-05-04 r72654) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.3 LTS

Matrix products: default BLAS: /usr/lib/libblas/libblas.so.3.6.0 LAPACK: /usr/lib/lapack/liblapack.so.3.6.0

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8

[4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8

[7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C

[10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] parallel stats4 stats graphics grDevices utils datasets methods base

other attached packages: [1] Homo.sapiens_1.3.1 TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2 [3] org.Hs.eg.db_3.4.1 GO.db_3.4.1

[5] OrganismDbi_1.19.0 GenomicFeatures_1.29.9

[7] AnnotationDbi_1.39.3 RTCGAToolbox_2.7.14

[9] httr_1.3.1 plyr_1.8.4

[11] RJSONIO_1.3-0 RCurl_1.95-4.8

[13] bitops_1.0-6 data.table_1.10.4

[15] RCircos_1.2.0 survival_2.41-3

[17] limma_3.33.9 Biobase_2.37.2

[19] GenomicRanges_1.29.14 GenomeInfoDb_1.13.4

[21] IRanges_2.11.16 S4Vectors_0.15.8

[23] BiocGenerics_0.23.1 XML_3.98-1.9

ADD COMMENTlink modified 8 weeks ago • written 8 weeks ago by Marcel Ramos ♦♦ 60
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