Question

differentially expressed genes form RSEM genes data

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lily ▴ 20

@lily-11438

Last seen 2.9 years ago

India

Hi

I have level3 RSEM gene data with raw counts. I want to find the differentially expressed genes using edge R but the problem is raw counts seems to be non-integer. What steps should i follow to get DEGs?

Thanks

rnaseq edgeR • 698 views

ADD COMMENT • link updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by lily ▴ 20

score 0 · Answer 1 · 2017-09-22

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Gordon Smyth 50k

@gordon-smyth

Last seen 35 minutes ago

WEHI, Melbourne, Australia

Non-integer counts are no problem, see: Does edgeR accept decimal / integer read counts for differential expression ?

ADD COMMENT • link 6.6 years ago Gordon Smyth 50k