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Question: Split Genome into 2kb bins GenomicRanges
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gravatar for chitsazanalex
12 months ago by
chitsazanalex0 wrote:

Is there a way to split the entire genome into a genomicRanges of 2kb bins? Im thinking something along that line that uses `seqlengths()` to get chromosome length and then some function to split into 2kb bins, with a GRange for each bin. It's that 'some function' i can't seem to find. 

 

ADD COMMENTlink modified 12 months ago by Hervé Pagès ♦♦ 13k • written 12 months ago by chitsazanalex0
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gravatar for Hervé Pagès
12 months ago by
Hervé Pagès ♦♦ 13k
United States
Hervé Pagès ♦♦ 13k wrote:

Take a look at ?tileGenome in the GenomicRanges package.

Cheers,

H.

ADD COMMENTlink written 12 months ago by Hervé Pagès ♦♦ 13k

Oh man, that is EXACTLY what I was looking for. Thank you

ADD REPLYlink written 12 months ago by chitsazanalex0
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