I am using the latest version of GOcluster on R2.1.1 for WinXP. When I invoke display() I get a very nice heatmap but the very top significant GO cluster annotation is off the top edge of the graph. Can I reset my plot parameters to fix this or is there something else I can try? Thanks, Mark W. Kimpel MD Indiana University

Kimpel, Mark William wrote: > I am using the latest version of GOcluster on R2.1.1 for WinXP. When I > invoke display() I get a very nice heatmap but the very top significant > GO cluster annotation is off the top edge of the graph. Can I reset my > plot parameters to fix this or is there something else I can try? Hi Mark, I assume that you are trying to display a hierarchical cluster? In that case you can add some parameters to the "display" function. You could try to modify the spacing (default is spacing=15). You can also look at the "plotAxis" function and the parameters that it accepts. I have to admit that this function is not sufficiently documented at the moment. If you have too many terms identified I would suggest lowering the significance threshold (at least for display purposes). Hope that helps. Cheers Gunnar