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@neelakandanbt-14048
Last seen 5.2 years ago
National Institute of Technology

hello evryone,

I was trying to analyse a group of agilent Microrarray data that was. i was using the AgiMicroRna package for this.

but when i was load the input file to the command it as showing the following errors.

1)i was using the following commands

library("AgiMicroRna")
Error: package or namespace load failed for ‘affycoretools’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called ‘S4Vectors’
Error: package ‘affycoretools’ could not be loaded

2) when trying to load the input file it was showing the following error

Error in read.table(file, header = TRUE, stringsAsFactors = FALSE, sep = sep,  :
unused arguments (infile = "targets.txt", verbose = TRUE)

Kindly help me in this.

AgiMicroRna • 719 views
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Entering edit mode
Axel Klenk ▴ 990
@axel-klenk-3224
Last seen 18 hours ago
Switzerland

Dear neelakandanbt,

the first message indicates that package 'S4Vectors' is not installed.  You need to install it before you can continue.

https://bioconductor.org/install/

on how to install Bioconductor packages.  I'd expect the second issue to go away once the first is fixed.

How did you install package 'AgiMicroRna' ?? -- If you had followed the instructions above I'd expect the dependencies

to be installed for you as well.

Hope this helps,

- axel

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Entering edit mode
@neelakandanbt-14048
Last seen 5.2 years ago
National Institute of Technology
dear Axel Klenk,  Thanks for the support. I was downloading the AgiMicroRna package using the command  source("https://bioconductor.org/biocLite.R") biocLite("AgiMicroRna") even then it showed the error on installing the package. That the package Affycoretools was not instaled so I installed the Affycoretools package seperately from the bioconductor. now it is working well.