Help for ChIP script !! Error message while installing packages
1
0
Entering edit mode
@melissaberto-14123
Last seen 6.6 years ago
Hi All,

I am looking for a script for annotating  Entrez Gene IDs to my coordinated peak files (MACS file.bed) and I am trying to install different package such as ChIPpeakAnno or TxDb.Hsapiens.UCSC.hg19.knownGene but I am troubling of understanding what this error message means :

> library(TxDb.Hsapiens.UCSC.hg19.knownGene)
> g = genes(TxDb.Hsapiens.UCSC.hg19.knownGene)

Error in `seqinfo<-`(`*tmp*`, new2old = new2old, pruning.mode = pruning.mode,  : 
  could not find symbol "force" in environment of the generic function
> 

I am really new in this field so it might be a really stupid question but if someones could help me out, I would really appreciate it. 

Thank you very much

Melissa

 

 

annotation chippeakanno • 945 views
ADD COMMENT
0
Entering edit mode
@martin-morgan-1513
Last seen 2 days ago
United States

Check that your packages are at the correct version, using

BiocInstaller::biocValid()

Follow any advice about updating 'too old' or 'too new' packages.

ADD COMMENT

Login before adding your answer.

Traffic: 604 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6