Question: Feature Count annotation file problem
gravatar for fatemeh.kaveh
12 months ago by
fatemeh.kaveh0 wrote:

Hi, I have generated my own annotation file for feature count, However I do not get any error in running but I get zero number which means none of the reads are aligned to my selected regions (created in annotation file). In IGV, I can see that reads are aligned to the selected regions. The annotation file is like this: 

GeneID   Chr   Start    End    Strand

>HLA:HLA00627   chr6  1   786  +

>HLA:HLA00629   chr6   1  769  + 




ADD COMMENTlink written 12 months ago by fatemeh.kaveh0

Hi, you need to follow the posting guide ( when you ask a question. For example, you need to provide information such as versions of software tools you use, your scripts related to your question etc.

Regarding your featureCounts question, you need to provide a reproducible example otherwise we can not help you.


ADD REPLYlink written 12 months ago by Wei Shi2.9k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 300 users visited in the last hour