Question: How to get the list of the components of all containers from the active RedeR session?
gravatar for luca.zoccarato
12 months ago by
luca.zoccarato10 wrote:


is there any way to extract the whole clustering structure of the all the nodes in the containers created with the command 'nesthc'? I would like to have something like two mapping vectors specifying for each node in the graph the 1st- and 2nd-level on containers in which they are clustered.

So if I have a graph with 8 nodes divided in 2 big containers, and each one of the container has 2 sub-groups:

node1, node2, node3, node4, node5, node6, node7, node8, node9, node10 # node names
NT1, NT1, NT1, NT1, NT1, NT1, NT2, NT2, NT2, NT2 # mapping 1st-level containers
NT3, NT3, NT4, NT4, NT4, NT4, NT5, NT5, NT6, NT6 # mapping 2nd-level containers

Best regards,


ADD COMMENTlink modified 12 months ago by m castro10 • written 12 months ago by luca.zoccarato10
gravatar for m castro
12 months ago by
m castro10
m castro10 wrote:

Dear Luca,

We have just concluded the revision of RedeR, it should appear in the bioc very soon. I think the new vignette exemplifies the information you need; please see the line that generates a variable called "nestID", which provides all IDs related to the containers.



ADD COMMENTlink written 12 months ago by m castro10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 165 users visited in the last hour