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Question: How to get the list of the components of all containers from the active RedeR session?
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gravatar for luca.zoccarato
6 weeks ago by
luca.zoccarato10 wrote:

Hi,

is there any way to extract the whole clustering structure of the all the nodes in the containers created with the command 'nesthc'? I would like to have something like two mapping vectors specifying for each node in the graph the 1st- and 2nd-level on containers in which they are clustered.

So if I have a graph with 8 nodes divided in 2 big containers, and each one of the container has 2 sub-groups:

node1, node2, node3, node4, node5, node6, node7, node8, node9, node10 # node names
NT1, NT1, NT1, NT1, NT1, NT1, NT2, NT2, NT2, NT2 # mapping 1st-level containers
NT3, NT3, NT4, NT4, NT4, NT4, NT5, NT5, NT6, NT6 # mapping 2nd-level containers

Best regards,

Luca

ADD COMMENTlink modified 5 weeks ago by m castro10 • written 6 weeks ago by luca.zoccarato10
0
gravatar for m castro
5 weeks ago by
m castro10
m castro10 wrote:

Dear Luca,

We have just concluded the revision of RedeR, it should appear in the bioc very soon. I think the new vignette exemplifies the information you need; please see the line that generates a variable called "nestID", which provides all IDs related to the containers.

Cordially,

Mauro

ADD COMMENTlink written 5 weeks ago by m castro10
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