Dear BioConductor community,
I've recently been trying to normalizing large metagenome abundance matrices with the function cpm(y) of edgeR. I get the following error:
Error in .isAllZero(counts) :
long vectors not supported yet: memory.c:3438
Calls: mergeTables -> DGEList -> .isAllZero -> .Call
This is obviously a memory issue and was just wondering if long vectors will be supported in the near future. I usually have no problems with this step, except for this time where this is the largest dataset I've been processing so far.