Question: Meaning oflLog2fold change in DEXseqResults object
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gravatar for i.sudbery
2.2 years ago by
i.sudbery10
European Union
i.sudbery10 wrote:

After completeing a DEXseq analysis with the following code:

dxd <- DEXSeqDataSet(counts, col_data, design= ~ sample + exon + condition:exon,
                           featureID = mcols(gffs)$exon_id,
                           groupID = mcols(gffs)$gene_id,
                           featureRanges=gffs)

dxd_results <- DEXSeq(dxd, quiet=F)

dxd_df <-as.data.frame(dxd_results)

 

The `dxd_df` dataframe contains a column `log2foldChange_knockdown_Control`. Is this logFC the logFC for the exon expression (i.e. includes changes in gene expression), or the exon usage?

 

Ian

 

 

 

dexseq • 286 views
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