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Question: How many genes are appropriate for GO enrichment analysis
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gravatar for Jack
6 months ago by
Jack0
Jack0 wrote:

Hi all,

I got a list of differential expressed genes about 4000. I want to do the GO enrichment, can I use all the DE genes?

What is the appropriate number of genes to do GO enrichment analysis?

ADD COMMENTlink modified 6 months ago by k.vitting.seerup20 • written 6 months ago by Jack0
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gravatar for k.vitting.seerup
6 months ago by
European Union
k.vitting.seerup20 wrote:

Yes you can use all DE genes (probably nice to seperate into up and down). There is no upper limit for gene-set analysis.

ADD COMMENTlink written 6 months ago by k.vitting.seerup20
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