How many genes are appropriate for GO enrichment analysis
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Jack • 0
@jack-14069
Last seen 2.5 years ago

Hi all,

I got a list of differential expressed genes about 4000. I want to do the GO enrichment, can I use all the DE genes?

What is the appropriate number of genes to do GO enrichment analysis?

go annotate rna-seq clusterprofiler • 810 views
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@kvittingseerup-7956
Last seen 3 months ago
European Union

Yes you can use all DE genes (probably nice to seperate into up and down). There is no upper limit for gene-set analysis.

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