question about "write.fit" function in limma-voom
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aec ▴ 90
@aec-9409
Last seen 3.8 years ago

Dear all,

Anybody knows how to extract the write.fit table with method="nestedF" ? the function only gives option for method="separate" or "global".

Thanks,

limma write.fit method nestedF • 771 views
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@gordon-smyth
Last seen 2 hours ago
WEHI, Melbourne, Australia
results <- decideTests(fit, method="nestedF")
write.fit(fit, results)

Note that nestedF is not a p-value adjustment method, so it cannot be an option for the "method" argument of write.fit.

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