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Question: question about "write.fit" function in limma-voom
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gravatar for aec
9 months ago by
aec40
aec40 wrote:

Dear all,

Anybody knows how to extract the write.fit table with method="nestedF" ? the function only gives option for method="separate" or "global".

Thanks,

ADD COMMENTlink modified 9 weeks ago by Gordon Smyth34k • written 9 months ago by aec40
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gravatar for Gordon Smyth
9 weeks ago by
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth34k wrote:
results <- decideTests(fit, method="nestedF")
write.fit(fit, results)

Note that nestedF is not a p-value adjustment method, so it cannot be an option for the "method" argument of write.fit.

ADD COMMENTlink written 9 weeks ago by Gordon Smyth34k
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