Hello! I am new to both RSEM and tximport, so I am unsure which this is an issue with. All of my RNA seq samples are in separate SampleName.rsem.genes.results files in one directory. Based on the vignette, it almost seems like all the samples should be in one gene.results file? Either way, I attempted to pack the files and read them in via the below code:
txi.rsem=tximport(rsem.files, type = "rsem")
And got the following error:
reading in files with read.delim (install 'readr' package for speed up)
1 Error: all(c(geneIdCol, abundanceCol, lengthCol) %in% names(raw)) is not TRUE
Thank you for any feedback!