Question: Analyzing CIRCLE-seq data using GUIDEseq package
gravatar for Julie Zhu
2.0 years ago by
Julie Zhu4.1k
United States
Julie Zhu4.1k wrote:


GUIDEseq package can be used to analyze CIRCLE-seq too. During the preprocessing steps, you will not need to remove adaptors introduced in the GUIDE-seq protocol. In addition, you will need to set the max.R1.len =150 and max.R2.len = 150 using the GUIDEseqAnalysis function in GUIDEseq package assuming your sequence run produces 150bp paired-end reads.


Best regards,



guideseq circle-seq • 347 views
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