Question: Analyzing CIRCLE-seq data using GUIDEseq package
gravatar for Julie Zhu
6 months ago by
Julie Zhu3.8k
United States
Julie Zhu3.8k wrote:


GUIDEseq package can be used to analyze CIRCLE-seq too. During the preprocessing steps, you will not need to remove adaptors introduced in the GUIDE-seq protocol. In addition, you will need to set the max.R1.len =150 and max.R2.len = 150 using the GUIDEseqAnalysis function in GUIDEseq package assuming your sequence run produces 150bp paired-end reads.


Best regards,



ADD COMMENTlink written 6 months ago by Julie Zhu3.8k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 117 users visited in the last hour