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Question: Cannot read Biom file
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gravatar for channen1221
7 months ago by
channen12210 wrote:

Hi there

I am terrible in R - its my worst nightmare. And i only post this because I am desperate. 

I have a .biom file (json version; format: Biological Observation Matrix 1.0.0). However when trying to import to RStudio I get an error message:

Error in read_biom(biom_file = BIOMfilename) : 
  Both attempts to read input file:

either as JSON (BIOM-v1) or HDF5 (BIOM-v2).
Check file path, file name, file itself, then try again.

I'm not entirely certain what I need to change or if i'm not using the correct packages. 

 

Thanks

ADD COMMENTlink modified 7 months ago by Axel Klenk830 • written 7 months ago by channen12210
0
gravatar for Axel Klenk
7 months ago by
Axel Klenk830
Switzerland
Axel Klenk830 wrote:

Hi Channen1221,

we need a little bit of information to help you.

First of all, please show us the command(s) you have entered.

Attaching the output of

sessionInfo()

is also a good idea.

Cheers,

 - axel

ADD COMMENTlink written 7 months ago by Axel Klenk830
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