Search
Question: Design of 'group' object in DGElist function
0
gravatar for fawazfebin
11 weeks ago by
fawazfebin30
fawazfebin30 wrote:

Hi

I have two replicates for two conditions ( resistant and sensitive ) at two time intervals for conducting a Differential Expression analysis using edgeR. How do I assign the condition for ' group ' in DGElist function? My data would look like R1,R2 vs. S1,S2 at one time interval and R3,R4 vs. S3,S4 at another time interval. Kindly guide.

 

ADD COMMENTlink modified 11 weeks ago by Aaron Lun18k • written 11 weeks ago by fawazfebin30
0
gravatar for Aaron Lun
11 weeks ago by
Aaron Lun18k
Cambridge, United Kingdom
Aaron Lun18k wrote:

Read Chapter 3 of the edgeR user's guide, in particular Section 3.3.

ADD COMMENTlink written 11 weeks ago by Aaron Lun18k

Thanks a lot. I was a bit confused on multiple factors. The third chapter helped.

ADD REPLYlink written 11 weeks ago by fawazfebin30
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 213 users visited in the last hour