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Question: Design of 'group' object in DGElist function
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gravatar for fawazfebin
15 days ago by
fawazfebin0
fawazfebin0 wrote:

Hi

I have two replicates for two conditions ( resistant and sensitive ) at two time intervals for conducting a Differential Expression analysis using edgeR. How do I assign the condition for ' group ' in DGElist function? My data would look like R1,R2 vs. S1,S2 at one time interval and R3,R4 vs. S3,S4 at another time interval. Kindly guide.

 

ADD COMMENTlink modified 14 days ago by Aaron Lun17k • written 15 days ago by fawazfebin0
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gravatar for Aaron Lun
14 days ago by
Aaron Lun17k
Cambridge, United Kingdom
Aaron Lun17k wrote:

Read Chapter 3 of the edgeR user's guide, in particular Section 3.3.

ADD COMMENTlink written 14 days ago by Aaron Lun17k

Thanks a lot. I was a bit confused on multiple factors. The third chapter helped.

ADD REPLYlink written 14 days ago by fawazfebin0
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