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Question: Design of 'group' object in DGElist function
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gravatar for fawazfebin
5 months ago by
fawazfebin30
fawazfebin30 wrote:

Hi

I have two replicates for two conditions ( resistant and sensitive ) at two time intervals for conducting a Differential Expression analysis using edgeR. How do I assign the condition for ' group ' in DGElist function? My data would look like R1,R2 vs. S1,S2 at one time interval and R3,R4 vs. S3,S4 at another time interval. Kindly guide.

 

ADD COMMENTlink modified 5 months ago by Aaron Lun19k • written 5 months ago by fawazfebin30
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gravatar for Aaron Lun
5 months ago by
Aaron Lun19k
Cambridge, United Kingdom
Aaron Lun19k wrote:

Read Chapter 3 of the edgeR user's guide, in particular Section 3.3.

ADD COMMENTlink written 5 months ago by Aaron Lun19k

Thanks a lot. I was a bit confused on multiple factors. The third chapter helped.

ADD REPLYlink written 5 months ago by fawazfebin30
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