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Question: Design of 'group' object in DGElist function
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gravatar for fawazfebin
11 months ago by
fawazfebin30
fawazfebin30 wrote:

Hi

I have two replicates for two conditions ( resistant and sensitive ) at two time intervals for conducting a Differential Expression analysis using edgeR. How do I assign the condition for ' group ' in DGElist function? My data would look like R1,R2 vs. S1,S2 at one time interval and R3,R4 vs. S3,S4 at another time interval. Kindly guide.

 

ADD COMMENTlink modified 11 months ago by Aaron Lun21k • written 11 months ago by fawazfebin30
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gravatar for Aaron Lun
11 months ago by
Aaron Lun21k
Cambridge, United Kingdom
Aaron Lun21k wrote:

Read Chapter 3 of the edgeR user's guide, in particular Section 3.3.

ADD COMMENTlink written 11 months ago by Aaron Lun21k

Thanks a lot. I was a bit confused on multiple factors. The third chapter helped.

ADD REPLYlink written 11 months ago by fawazfebin30
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