Question: Design of 'group' object in DGElist function
0
gravatar for fawazfebin
2.1 years ago by
fawazfebin • 30
fawazfebin • 30 wrote:

Hi

I have two replicates for two conditions ( resistant and sensitive ) at two time intervals for conducting a Differential Expression analysis using edgeR. How do I assign the condition for ' group ' in DGElist function? My data would look like R1,R2 vs. S1,S2 at one time interval and R3,R4 vs. S3,S4 at another time interval. Kindly guide.

 
rnaseq dgelist group egder • 672 views
ADD COMMENT • link •
modified 2.1 years ago by Aaron Lun • 25k • written 2.1 years ago by fawazfebin • 30
Answer: Design of 'group' object in DGElist function
0
gravatar for Aaron Lun
2.1 years ago by
Aaron Lun • 25k
Cambridge, United Kingdom
Aaron Lun • 25k wrote:

Read Chapter 3 of the edgeR user's guide, in particular Section 3.3.
ADD COMMENT • link written 2.1 years ago by Aaron Lun • 25k

Thanks a lot. I was a bit confused on multiple factors. The third chapter helped.

ADD REPLY • link written 2.1 years ago by fawazfebin • 30
Please log in to add an answer.

Similar posts • Search »

  • Nothing matches yet.
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 172 users visited in the last hour