Design of 'group' object in DGElist function
1
0
Entering edit mode
fawazfebin ▴ 60
@fawazfebin-14053
Last seen 4.2 years ago

Hi

I have two replicates for two conditions ( resistant and sensitive ) at two time intervals for conducting a Differential Expression analysis using edgeR. How do I assign the condition for ' group ' in DGElist function? My data would look like R1,R2 vs. S1,S2 at one time interval and R3,R4 vs. S3,S4 at another time interval. Kindly guide.

 

egder dgelist group rnaseq • 3.4k views
ADD COMMENT
0
Entering edit mode
Aaron Lun ★ 28k
@alun
Last seen 6 hours ago
The city by the bay

Read Chapter 3 of the edgeR user's guide, in particular Section 3.3.

ADD COMMENT
0
Entering edit mode

Thanks a lot. I was a bit confused on multiple factors. The third chapter helped.

ADD REPLY

Login before adding your answer.

Traffic: 598 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6