I am attempting to annotate some ChIP-Seq data that I have called using MACS2. I just want to annotation peaks to specific regions, such as following classes : promoter, 5’ untranslated region (UTR), 3’ UTR, coding exon and intron),and intergenic regions from gtf file( convert to 'TxDB'). However, the result always output annotations to regions which i do not care about, like first intron, first exon and downtream 3000. How to set my focused regions?
Question: chipseeker annotation of focused genic regions
8 months ago by
wuzefeng2008 • 0
wuzefeng2008 • 0 wrote:
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