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Question: Ribeirao Preto, Brazil, mirror with wrong address using chooseBioCMirror()
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gravatar for gabrielfranco
10 days ago by
gabrielfranco0 wrote:

Hello,

I am using BioConductor version 3.6 with R 3.4.2 and when I try to choose the Brazilian mirror in the function chooseBioCMirror() it tries to access the address

https://bioconductor.fmrp.usp.br/packages/3.6/bioc

when in fact it should be accessing

https://bioconductor.fmrp.usp.br/bioc/packages/3.6/

There may be a simple way to chance the mirror manually, but should this be fixed in the function source code or is anything in mey configuration? The default mirror works perfectly.

Thanks,

Gabriel.

--

> sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Arch Linux

Matrix products: default
BLAS: /usr/lib/libblas.so.3.7.1
LAPACK: /usr/lib/liblapack.so.3.7.1

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.28.0

loaded via a namespace (and not attached):
[1] compiler_3.4.2 tools_3.4.2
ADD COMMENTlink modified 4 days ago by shepherl ♦♦ 510 • written 10 days ago by gabrielfranco0
0
gravatar for shepherl
4 days ago by
shepherl ♦♦ 510
shepherl ♦♦ 510 wrote:

Sorry for the delay. We have updated the mirror and it should now be accessing from the correct location. Please let us know if you have any further issues.

Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help
> library(utils)
> options("BioC_mirror")
$BioC_mirror
NULL

> chooseBioCmirror()
> options("BioC_mirror")
$BioC_mirror
Brazil/Latin America (Ribeirão Preto) [https] 
      "https://bioconductor.fmrp.usp.br/bioc"
ADD COMMENTlink written 4 days ago by shepherl ♦♦ 510
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