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Question: Deseq2 for small matched samples
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gravatar for lirongrossmann
8 months ago by
lirongrossmann10 wrote:

Hi everyone,

I have 16 rna seq samples (not replicates) and I want to compare 8 vs 8 which are paired matched.

Are there any adjustments when using Deseq I can make for the small sample size and pairwise comparisons?

Thanks!

ADD COMMENTlink modified 8 months ago by Michael Love18k • written 8 months ago by lirongrossmann10
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gravatar for Michael Love
8 months ago by
Michael Love18k
United States
Michael Love18k wrote:

DESeq2 is specially designed to work with small sample size data such as this. You can use ~patient + condition.

ADD COMMENTlink written 8 months ago by Michael Love18k
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