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Question: Deseq2 for small matched samples
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gravatar for lirongrossmann
11 days ago by
lirongrossmann0 wrote:

Hi everyone,

I have 16 rna seq samples (not replicates) and I want to compare 8 vs 8 which are paired matched.

Are there any adjustments when using Deseq I can make for the small sample size and pairwise comparisons?

Thanks!

ADD COMMENTlink modified 11 days ago by Michael Love14k • written 11 days ago by lirongrossmann0
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gravatar for Michael Love
11 days ago by
Michael Love14k
United States
Michael Love14k wrote:

DESeq2 is specially designed to work with small sample size data such as this. You can use ~patient + condition.

ADD COMMENTlink written 11 days ago by Michael Love14k
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