Question: bnbc: Does it makes sense to make batch effect correction optional?
gravatar for Alejandro Reyes
13 months ago by
Alejandro Reyes1.6k
Dana-Farber Cancer Institute, Boston, USA
Alejandro Reyes1.6k wrote:

Thanks for developing bnbc! I am interested in using the proposed across sample normalization method (smoothing + per-band quantile normalization). However, my data was processed in a single batch and thus the batch correction step might not be needed. In the current implementation, I did not find a way to skip the batch correction step. Is this possible? Does it make sense?

ADD COMMENTlink written 13 months ago by Alejandro Reyes1.6k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 391 users visited in the last hour