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Question: bnbc: Does it makes sense to make batch effect correction optional?
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7 months ago by
Alejandro Reyes1.5k
Dana-Farber Cancer Institute, Boston, USA
Alejandro Reyes1.5k wrote:

Thanks for developing bnbc! I am interested in using the proposed across sample normalization method (smoothing + per-band quantile normalization). However, my data was processed in a single batch and thus the batch correction step might not be needed. In the current implementation, I did not find a way to skip the batch correction step. Is this possible? Does it make sense?