Question: Anova test on gene expression data
0
gravatar for sally_b86
2.2 years ago by
sally_b860
sally_b860 wrote:

Hi, 

Anyone knows a way to conduct anova test on gene expression data other than the DESeq2 and Limma package?

Thank you 

anova gene expression • 449 views
ADD COMMENTlink modified 2.2 years ago by James W. MacDonald52k • written 2.2 years ago by sally_b860

Is there any reason why you don't want to use the Bioconductor packages designed to do this?

ADD REPLYlink written 2.2 years ago by Gordon Smyth39k

Actually I already did the first statistical filtering based on DESeq2 function, I want to do further analysis on the filtered genes but by Anova test on data normalized by DESeq2 on different conditions. 

ADD REPLYlink written 2.2 years ago by sally_b860
Answer: Anova test on gene expression data
0
gravatar for James W. MacDonald
2.2 years ago by
United States
James W. MacDonald52k wrote:

Sure. You could just use lm from the base package.

ADD COMMENTlink written 2.2 years ago by James W. MacDonald52k
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