Question: Removing/combining specific annotation categories in ChIPSeeker plots/analysis
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gravatar for rbronste
2.1 years ago by
rbronste60
rbronste60 wrote:

Running the following code:

peakAnno <- annotatePeak(files[[4]], tssRegion=c(-3000, 3000),
                         TxDb=TxDb.Mmusculus.UCSC.mm10.knownGene, annoDb="org.Mm.eg.db")

plotAnnoBar(peakAnnoList, title = "MeA F/M Peak Annotation")

In the current form plotting 11 annotation categories and want to be able to cut down on what the plot displays, by eliminating some (e.g. 5' UTR) and combining some (e.g. peaks at varying distances from promoter into one promoter category). Was attempting to use to cut down on the categories:

genomicAnnotationPriority

However I don't believe I am using it correctly.

How can I go about doing this? Thank you!

chipseq annotation chipseeker • 401 views
ADD COMMENTlink modified 2.1 years ago • written 2.1 years ago by rbronste60
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