Question: Removing/combining specific annotation categories in ChIPSeeker plots/analysis
gravatar for rbronste
22 months ago by
rbronste60 wrote:

Running the following code:

peakAnno <- annotatePeak(files[[4]], tssRegion=c(-3000, 3000),
                         TxDb=TxDb.Mmusculus.UCSC.mm10.knownGene, annoDb="")

plotAnnoBar(peakAnnoList, title = "MeA F/M Peak Annotation")

In the current form plotting 11 annotation categories and want to be able to cut down on what the plot displays, by eliminating some (e.g. 5' UTR) and combining some (e.g. peaks at varying distances from promoter into one promoter category). Was attempting to use to cut down on the categories:


However I don't believe I am using it correctly.

How can I go about doing this? Thank you!

chipseq annotation chipseeker • 384 views
ADD COMMENTlink modified 22 months ago • written 22 months ago by rbronste60
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