Question: how to define the downstream range in ChIPseeker
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gravatar for lifeng.liu.biology
2.1 years ago by
lifeng.liu.biology10 wrote:

Does anyone know how to set the downstream range for the peak annotation? It seems the default setting of downstream is 3kb. I would like to set the downstream range from 3kb to 500bp. Thanks

chipseq chipseeker h3k27me3 • 561 views
ADD COMMENTlink modified 2.1 years ago by Guangchuang Yu1.1k • written 2.1 years ago by lifeng.liu.biology10
Answer: how to define the downstream range in ChIPseeker
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gravatar for Guangchuang Yu
2.1 years ago by
Guangchuang Yu1.1k
China/Guangzhou/Southern Medical University
Guangchuang Yu1.1k wrote:

Sorry, it is hard coded.

I update the source code in devel branch to support setting the downstream range via:

options(ChIPseeker.downstreamDistance = 500)
‚Äč
ADD COMMENTlink written 2.1 years ago by Guangchuang Yu1.1k
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