Question: Plot the normalized exon counts by exon length in DEXSeq
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gravatar for tanerarslan.gen
22 months ago by
tanerarslan.gen0 wrote:

Hi all, 

I am using DEXSeq so far without any problem. But I am interested in normalized counts by length in dexseq plot. Therefore, I assume i will get considerably less fluctuated expressions across exons. To do that, I have changed the countData in before plotting, (i know the analyze is based on count data, therefore i did not do that at the beginning  of the analyze). Like that;

dxr2$countData <- count.norm.data

plotDEXSeq( dxr2, "ENSG00000107771", legend=TRUE, cex.axis=1.2, cex=1.3,
            lwd=2 ) 

Well, it worked for some cases, but for some cases i have following error;

Fit for gene/exon ENSG00000182718 failed, coefficients for this gene won't show up.
NULL

Should I change something from source code ?

So, any comments and help will be much appreciated. 

 

 

 

 

dexseq plotdexseq • 445 views
ADD COMMENTlink modified 22 months ago • written 22 months ago by tanerarslan.gen0
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