Plot the normalized exon counts by exon length in DEXSeq
0
0
Entering edit mode
@tanerarslangen-14587
Last seen 6.4 years ago

Hi all, 

I am using DEXSeq so far without any problem. But I am interested in normalized counts by length in dexseq plot. Therefore, I assume i will get considerably less fluctuated expressions across exons. To do that, I have changed the countData in before plotting, (i know the analyze is based on count data, therefore i did not do that at the beginning  of the analyze). Like that;

dxr2$countData <- count.norm.data

plotDEXSeq( dxr2, "ENSG00000107771", legend=TRUE, cex.axis=1.2, cex=1.3,
            lwd=2 ) 

Well, it worked for some cases, but for some cases i have following error;

Fit for gene/exon ENSG00000182718 failed, coefficients for this gene won't show up.
NULL

Should I change something from source code ?

So, any comments and help will be much appreciated. 

 

 

 

 

dexseq plotdexseq • 808 views
ADD COMMENT

Login before adding your answer.

Traffic: 876 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6