Gviz GenomeAxisTrack Annotation
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Russ Fraser ▴ 30
@russ-fraser-13646
Last seen 5.7 years ago
Ontario Veterinary College, University …

Very basic question regarding the annotation of a GenomeAxisTrack in gviz using add53 and add35. It looks like both strands have a 5' on the left, and a 3' on the right. It appears that way in my plots, as well as in the Dec 5, 2017 version of the documentation (p16). Shouldn't the bottom (reverse) strand be swapped?

Reproducible code (from the documentation):

axisTrack <- GenomeAxisTrack(range = IRanges(start = c(2e+06, 4e+06), end = c(3e+06, 7e+06), names = rep("N-stretch", 2)))

plotTracks(axisTrack, from = 1e+06, to = 9e+06, add53 = TRUE, add35 = TRUE)
gviz • 706 views
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Entering edit mode
Robert Ivanek ▴ 730
@robert-ivanek-5892
Last seen 4 months ago
Switzerland

Dear Russ,

Thanks for reporting the bug, it is fixed in 1.23.2 (devel) 1.22.2 (release). Should be available in next few days.

Best

Robert

 

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