Error : object path is not exported by namespace:Rsamtools
0
0
Entering edit mode
inzirio ▴ 10
@inzirio-13571
Last seen 4 months ago
Italy

Hi,

from this morning this error appeared when I try to install some packages, like "ChIPpeakAnno" and "ensembldb".

my sessioninfo is:

sessionInfo()
R Under development (unstable) (2017-11-26 r73782)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS

Matrix products: default
BLAS: /usr/local/lib/R/lib/libRblas.so
LAPACK: /usr/local/lib/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=it_IT.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=it_IT.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=it_IT.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.29.2 devtools_1.13.4     

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.14        roxygen2_6.0.1      digest_0.6.13      
 [4] withr_2.1.0         commonmark_1.4      R6_2.2.2           
 [7] magrittr_1.5        stringi_1.1.6       xml2_1.1.1         
[10] DEScan2_2.00.0      tools_3.5.0         stringr_1.2.0      
[13] parallel_3.5.0      compiler_3.5.0      BiocGenerics_0.25.1
[16] memoise_1.1.0      

 

Does anyone knows how to handle this problem?

Thanks!

packages installation problem rsamtools chippeakanno ensembldb • 2.3k views
ADD COMMENT
1
Entering edit mode

Looking at NAMESPACEs of ensembldb and ensembldb, seems that they want to import this path function from Rsamtools package...

But Rsamtools seems to not export it anymore!
 

ADD REPLY
0
Entering edit mode

Thanks for reporting! I'll look into it.

ADD REPLY

Login before adding your answer.

Traffic: 819 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6