News: ensembl 91 gtfs and fasta twobits have been added to AnnotationHub
1
gravatar for shepherl
22 months ago by
shepherl ♦♦ 1.6k
United States
shepherl ♦♦ 1.6k wrote:

Hello all,

The ensembl 91 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.6 (release) and Bioc3.7 (development)

Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help
> library(AnnotationHub)
> hub = AnnotationHub()
snapshotDate(): 2017-10-27
> length(query(hub, c("ensembl", "gtf", "release-91")))
[1] 279
> length(query(hub, c("fasta", "release-91", "twobit")))
[1] 462



Bioconductor version 3.7 (BiocInstaller 1.29.2), ?biocLite for help
> library(AnnotationHub)
> hub = AnnotationHub()
snapshotDate(): 2017-12-20
> length(query(hub, c("ensembl", "gtf", "release-91")))
[1] 279
> length(query(hub, c("fasta", "release-91", "twobit")))
[1] 462

Thank you

ADD COMMENTlink modified 22 months ago • written 22 months ago by shepherl ♦♦ 1.6k
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