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News: ensembl 91 gtfs and fasta twobits have been added to AnnotationHub
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gravatar for shepherl
6 months ago by
shepherl ♦♦ 620
United States
shepherl ♦♦ 620 wrote:

Hello all,

The ensembl 91 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.6 (release) and Bioc3.7 (development)

Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help
> library(AnnotationHub)
> hub = AnnotationHub()
snapshotDate(): 2017-10-27
> length(query(hub, c("ensembl", "gtf", "release-91")))
[1] 279
> length(query(hub, c("fasta", "release-91", "twobit")))
[1] 462



Bioconductor version 3.7 (BiocInstaller 1.29.2), ?biocLite for help
> library(AnnotationHub)
> hub = AnnotationHub()
snapshotDate(): 2017-12-20
> length(query(hub, c("ensembl", "gtf", "release-91")))
[1] 279
> length(query(hub, c("fasta", "release-91", "twobit")))
[1] 462

Thank you

ADD COMMENTlink modified 6 months ago • written 6 months ago by shepherl ♦♦ 620
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