I wanted to use BiSeq for my RRBS data but I little confused in how to make BSraw object.
I have 20 RRBS samples in 7 groups, my genome is Mouse (mm10) and I would like to find all DMR in all chromosomes.
Do you have any idea about creating BSraw in default way? because I've tried many times but I got little progress in it.
BSraw(metadata = metadata,
rowRanges = rowRanges,
colData = colData,
totalReads = totalReads,
methReads = methReads)