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Question: scater automatically limit gene list size?
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gravatar for tsofoon
8 months ago by
tsofoon0
tsofoon0 wrote:

I was creating a new scater object with a list of 20K genes. After the new sce object is created, the gene list was automatically reduced to ~2K genes. Is this by default? How can I fix it to incorporate all 20K genes?

ADD COMMENTlink written 8 months ago by tsofoon0

You're going to have to be more specific. What is your code? What functions are you using? What version of scater are you using? The latest version doesn't even support SCESet objects, you should be using SingleCellExperiment instead.

ADD REPLYlink modified 8 months ago • written 8 months ago by Aaron Lun21k
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