Question: Extract info from smc object
0
gravatar for da.de
20 months ago by
da.de10
Austria
da.de10 wrote:

Dear all,

I have a very basic question:
I have a list of smc objects and I want to extract the info available in slot "ids".
How can I do that? The list was creted using the readGmt function from the PGSEA package. However, I do not have the original gmt file.

Below you find an example of one of the list elements.

Thanks for your help!
Best, Dagmar

c2E[[100]]
# An object of class "smc"
# Slot "reference":
#   [1] "KEGG_ENDOCYTOSIS"
#
# Slot "desc":
#   [1] "http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_ENDOCYTOSIS"
#
# Slot "source":
#   character(0)
#
# Slot "design":
#   character(0)
#
# Slot "identifier":
#   character(0)
#
# Slot "species":
#   character(0)
#
# Slot "data":
#   character(0)
#
# Slot "private":
#   character(0)
#
# Slot "creator":
#   character(0)
#
# Slot "ids":
#   [1] "F2R"       "EPN3"      "IQSEC1"    "IQSEC3"    "ADRBK2"    "ADRBK1"

 

pgsea smc object • 282 views
ADD COMMENTlink written 20 months ago by da.de10
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