Question: Error in export ifelse from IRanges
gravatar for dalibor.miklik
9 weeks ago by
dalibor.miklik0 wrote:


I am using the package restrSiteUtils version 1.2.8. Until now, everything was fine but now when I want to start working with the package, following error arise:

> library(restrSiteUtils)
Error: package or namespace load failed for ‘restrSiteUtils’:
 object ‘ifelse’ is not exported by 'namespace:IRanges'

I have just recently updated R and all Bioconductor packages that I use. Is IRanges package changed somehow so exporting ifelse doesn't work? And does anybody have an idea how could I overcome this error so I could use my desired package?

Thanks in advance for any advice


> sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 8.1 x64 (build 9600)

Matrix products: default

[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252    LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                           LC_TIME=English_United States.1252    

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] GenomicRanges_1.30.0 GenomeInfoDb_1.14.0  IRanges_2.12.0       S4Vectors_0.16.0     BiocGenerics_0.24.0

loaded via a namespace (and not attached):
[1] zlibbioc_1.24.0        compiler_3.4.3         XVector_0.18.0         GenomeInfoDbData_1.0.0 RCurl_1.95-4.10        Biostrings_2.46.0     
[7] bitops_1.0-6
ADD COMMENTlink modified 9 weeks ago by James W. MacDonald45k • written 9 weeks ago by dalibor.miklik0
gravatar for James W. MacDonald
9 weeks ago by
United States
James W. MacDonald45k wrote:

This is a question you should be asking of the maintainer for restrSiteUtils, which isn't a Bioconductor package. This site is intended to support Bioconductor packages, not other packages that may make use of some Bioconductor packages.

You might point out that IRanges no longer defines nor exports ifelse, but instead ifelse2:

commit 2efbf8d4bd5f4b94174226c79b2b0293f7b11a1b
Author: Michael Lawrence <>
Date:   Fri Jul 7 05:28:37 2017 +0000

    replace ifelse generic and methods with ifelse2 (eager semantics)
    git-svn-id: file:///home/git/ bc3139a8-67e5-0310-9ffc-ced21a209358


ADD COMMENTlink written 9 weeks ago by James W. MacDonald45k
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