(updated error message)
I am getting an error message with the exomecopy, compileCopyCountSegments
Error in FUN(X[[i]], ...) :
trying to get slot "path" from an object of a basic class ("NULL") with no slots
Calls: compileCopyCountSegments -> lapply -> lapply -> FUN -> lapply -> lapply -> FUN
I have tried the package before with other datasets but never saw this error (see below), one thing that I changed is the reference genome. previously, I used genome build with "chr" prefix and now without. don't know if that could cause an issue. I was wondering if you would have any thoughts what I might be doing wrong to get this error. I will be happy to share the rdata object if you would need to look at it.
thanks for you kind help