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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
2 hours ago
shuwangxinze1996
• 0
1
vote
2
replies
895
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 4 hours ago by
Tim Peters
▴ 170 • written 13 months ago by
jose.ramirez1
▴ 10
0
votes
1
reply
54
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma
RNASeq
voom
updated 7 hours ago by
Gordon Smyth
50k • written 7 hours ago by
taur.vil
• 0
1
vote
1
reply
44
views
DESeq2 - dispersion estimation when there is none
DESeq2
updated 14 hours ago by
Michael Love
41k • written 14 hours ago by
WardDeb
• 0
0
votes
0
replies
20
views
minfi::read.metharray.exp
minfiData
minfi
15 hours ago
clacarion
• 0
1
vote
4
replies
106
views
Error EPICv2 ChAMP
ChAMPdata
IlluminaHumanMethylationEPICv2anno.20a1.hg38
ChAMP
updated 14 hours ago by
James W. MacDonald
65k • written 4 days ago by
Mirella Aurora
• 0
0
votes
1
reply
65
views
FDR via q-value
qvalue
updated 17 hours ago by
James W. MacDonald
65k • written 3 days ago by
John
• 0
0
votes
2
replies
73
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb
AnnotationForge
1 day ago • updated 2 hours ago
Gayatri
• 0
0
votes
2
replies
125
views
RNAseq:Technical replicates from different batches
technicalReplicates
BatchEffect
limma
RNASeq
3 days ago • updated 21 hours ago
catv
• 0
0
votes
0
replies
30
views
Improving the design matrices vignette in RNAseq123
RNAseq123
22 hours ago
Lluís Revilla Sancho
▴ 730
0
votes
3
replies
1.1k
views
News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
updated 1 day ago by
lauryfriese932
• 0 • written 18 months ago by
Maria Doyle
▴ 70
6
votes
12
replies
4.6k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
5 months ago • updated 17 hours ago
shepherl
3.8k
0
votes
2
replies
69
views
Trying to use enrichGO
clusterProfiler
GenomicDistributionsData
KEGG
1 day ago • updated 6 hours ago
fernanda.backsouza
• 0
0
votes
0
replies
27
views
Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
2 days ago
vaxahey107
• 0
12
votes
12
replies
706
views
Why p value inconsistent when using different number of pathway score?
limma
updated 1 day ago by
Robert Castelo
★ 3.3k • written 2 days ago by
Chris
• 0
0
votes
0
replies
46
views
I am trying to detect alternative splicing.
ASpli
2 days ago
Sebashish
• 0
3
votes
2
replies
125
views
Cannabis and KEGGgraph
KEGGREST
GenomicDistributionsData
KEGGgraph
KEGG
updated 20 hours ago by
Guido Hooiveld
★ 3.9k • written 3 days ago by
fernanda.backsouza
• 0
0
votes
6
replies
581
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
7 weeks ago • updated 3 days ago
shepherl
3.8k
0
votes
3
replies
87
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 3 days ago by
James W. MacDonald
65k • written 3 days ago by
bas_work
▴ 30
1
vote
2
replies
118
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 3 days ago by
James W. MacDonald
65k • written 4 days ago by
sansan
• 0
1
vote
0
replies
173
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
3 days ago
BioinfGuru
▴ 30
3
votes
6
replies
291
views
FilterByExpr low counts with small sample size
edgeR
5 days ago • updated 14 hours ago
Jonathan
▴ 10
0
votes
2
replies
77
views
How to make DGEList and design matrix by edgeR package
DGEList
edgeR
3 days ago
prity6459
• 0
0
votes
3
replies
112
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 3 days ago by
Gordon Smyth
50k • written 4 days ago by
prity6459
• 0
0
votes
1
reply
100
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 3 days ago by
Gordon Smyth
50k • written 4 days ago by
Shaimaa Gamal
• 0
0
votes
4
replies
119
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
4 days ago
sropri
• 0
0
votes
1
reply
70
views
Different number of exons in reference genome affects DEXSeq analysis
DEXSeq
updated 4 days ago by
Alejandro Reyes
★ 1.9k • written 4 days ago by
Alessia
• 0
0
votes
1
reply
105
views
Adding columns to DEXSeqResults object
DEXSeq
updated 4 days ago by
Alejandro Reyes
★ 1.9k • written 6 days ago by
Clyde
• 0
0
votes
0
replies
76
views
Warning while loading DEP package
DEP
updated 4 days ago by
shepherl
3.8k • written 4 days ago by
Namrata
• 0
0
votes
1
reply
76
views
rlog transformation
DESeq2
updated 4 days ago by
Michael Love
41k • written 4 days ago by
ishij9717
• 0
0
votes
1
reply
73
views
ONT long-read RNA sequencing - data analysis options
DESeq2
LongRead
DEXSeq
IsoformSwitchAnalyzeR
RNASeq
updated 4 days ago by
Michael Love
41k • written 4 days ago by
09191919
• 0
0
votes
1
reply
84
views
DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
DESeq2
updated 4 days ago by
Michael Love
41k • written 5 days ago by
ussarizona
• 0
0
votes
1
reply
99
views
covariate with negative and positive values
DESeq2
updated 4 days ago by
Michael Love
41k • written 6 days ago by
Brynn
• 0
0
votes
1
reply
105
views
DESEQ2 output gives multiple groups when only 2 groups are present
DESeq2
updated 4 days ago by
ATpoint
★ 4.0k • written 5 days ago by
quanah.hudson
• 0
1
vote
2
replies
170
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
4 days ago
Le
• 0
1
vote
2
replies
116
views
Error in champ.load(): The following specified files do not exist
ChAMP
5 days ago • updated 4 days ago
Sherin
• 0
0
votes
1
reply
73
views
Input Question for deseq.r
RSeqAn
updated 4 days ago by
ATpoint
★ 4.0k • written 5 days ago by
Nina
• 0
0
votes
4
replies
177
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
5 days ago • updated 3 days ago
lonn
• 0
0
votes
6
replies
201
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
updated 5 days ago by
Gordon Smyth
50k • written 5 days ago by
hortense96
• 0
0
votes
0
replies
54
views
News:
Services
flowBeads
5 days ago
creativepeptides2018
• 0
0
votes
0
replies
45
views
Enzyme Engineering
BioTIP
5 days ago
bocchemistry
• 0
0
votes
0
replies
54
views
News:
TIDES USA 2024
flowBeads
6 days ago
bocsci11
• 0
0
votes
0
replies
69
views
Syntaxt Error in IsorcorrectoR package with Molecule Info File
Syntaxerror
IsoCorrectoR
6 days ago
Maliha Tabassum
• 0
0
votes
4
replies
142
views
flowStats Search Error
flowStats
updated 6 days ago by
shepherl
3.8k • written 7 days ago by
tholmes
• 0
3
votes
18
replies
2.8k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 5 days ago
shepherl
3.8k
0
votes
1
reply
113
views
SNP locus package for mouse?
SNPlocs
packFinder
updated 6 days ago by
James W. MacDonald
65k • written 9 days ago by
tian.liu0720
• 0
1
vote
2
replies
102
views
geneList error in clusterprofiler
clusterProfiler
GeneSetEnrichment
6 days ago
Ana
• 0
0
votes
5
replies
1.6k
views
blockwiseModule crashes in the end and doesn't generate modules
WGCNA
written 12 months ago by
mauricio.microbiol
• 0
0
votes
1
reply
94
views
what is the sampleFiles
chipseq
updated 6 days ago by
James W. MacDonald
65k • written 6 days ago by
zhulin
• 0
1
vote
1
reply
149
views
Differentially expressed genes in monocle pseudotime
monocle
updated 6 days ago by
Gordon Smyth
50k • written 9 days ago by
kthapa
• 0
45,561 results • Page
1 of 912
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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
Tim Peters
▴ 170
Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…
Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
by
Gordon Smyth
50k
No, you cannot use residuals to compute logFCs. From the information you give, I guess that you need to add individual-specific condition …
Comment: Error EPICv2 ChAMP
by
James W. MacDonald
65k
You don't need to do either of the above suggestions. ``` library(BiocManager) install("YuanTian1991/ChAMPdata") ``` will install without…
Votes
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
Answer: Differentially expressed genes in monocle pseudotime
Answer: DESeq2 - dispersion estimation when there is none
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