Closed:How to download TCGA vcf file from GDC data portal?
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Biologist ▴ 110
@biologist-9801
Last seen 4.0 years ago

 

Hi,

I went through TCGAbiolinks package to download TCGA somatic mutational data. But I'm able to download maf format. I would like to download vcf file. But couldn't. [http://bioconductor.org/packages/release/bioc/vignettes/TCGAbiolinks/inst/doc/mutation.html#mutation_data_(hg19)]

Can anyone please tell me how to get the vcf file?

Thank you

tcgabiolinks vcf somatic mutations • 609 views
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