visualize CNV data based on WGS
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Bogdan ▴ 620
@bogdan-2367
Last seen 15 days ago
Palo Alto, CA, USA

Dear all,

we have been calling CNV (copy-number variations) in cancer genomes based on whole-genome sequencing data (WGS), using some of the packages available in BioC.

Please would you advise -- what would be the best way to visualize WGS in order inspect visually the CNV predictions ?

Is there any package in BioC where visualization is easier ? The BAM files of germline and tumor samples are big (> 60-80 GB)..

thanks a lot !

-- bogdan

CNV • 383 views
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