I was wondering how I can export the results of my `msa` run into a file.
I know I can export it to a fasta file using `unmasked(msa)`, but I would like to export the complete results I see in the terminal to a file or if possible in clustal format.
this is my script:
P <- msa(seqs, order = "input", "ClustalOmega") print(P, show = "complete") writeXStringSet(unmasked(P), file="test.clustal")
But this gives ma a fasta file. Is there a way to get the clustal format as an output?